View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3017_low_3 (Length: 447)
Name: NF3017_low_3
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Original strand, 49653393 - 49653816
Alignment:
| Q |
14 |
caattccctctcactctcccaaccacttctctctaatggatgctacctcacaacctttgaagtatcaggtaacatgttacttcaacccaacaatcacacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653393 |
caattccctctcactctcccaaccacttctctctaatggatgctacctcacaacctttgaagtatcaggtaacatgttacttcaacccaacaatcacacc |
49653492 |
T |
|
| Q |
114 |
ctattgtcaaaatctttctttgttttttattttgtaagctaaagttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653493 |
ctattgtcaaaatctttctttgttttttattttgtaagctaaacttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgt |
49653592 |
T |
|
| Q |
214 |
aggaggaaagtaaagaaagttcttcagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653593 |
aggaggaaagtaaagaaagttcttcagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatg |
49653692 |
T |
|
| Q |
314 |
catggaaagattacaagtcttaaa---tcttactttgctaaacccaaaatcactgtcatttccatttacccttttcttaccactaaaacactgtatggtt |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653693 |
catggaaagattacaagtcttaaatcttcttactttgctaaacccaaaatcactgtcatttccatttacccttttcttaccactaaaacactgtatggtt |
49653792 |
T |
|
| Q |
411 |
tggtggctggtgctctaataagta |
434 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49653793 |
tggtggctggtgctctaataagta |
49653816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 14382151 - 14382068
Alignment:
| Q |
172 |
cagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtact |
255 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| | || |||||||||||||| |
|
|
| T |
14382151 |
cagacatggttcttgaaagtttctatccactgtgaaggttgcagaaagaaagtaaagaaagttttaaagcgcattgatggtact |
14382068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University