View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_low_4 (Length: 446)
Name: NF3017_low_4
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 438
Target Start/End: Complemental strand, 38725265 - 38724819
Alignment:
| Q |
12 |
ataaattataaatttaaaccctacttaaattagctttcaaaatctgtaaaatacacaagtttgtgagaaaaattggtaaacgaatgtgtctattttagtt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38725265 |
ataagttataaatttaaaccctacttaaattagctttcaaaatctgtaaaatacacaagtttgtgagaaaaattggtaaatgaatgtgtctattttagtt |
38725166 |
T |
|
| Q |
112 |
atgttattttcttatttttggttcaacaaaaacattattgttaatttataaattattaaccatccattgagccctttcnnnnnnnnnnnctatccattga |
211 |
Q |
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| T |
38725165 |
atgttattttcttttttttggttcaacaaaaacattattgttaatttataaattattaaccatccattgagccctttcaaaaaaaaaaactatccattga |
38725066 |
T |
|
| Q |
212 |
gcgtaatttactaatttcggaaatt--------------ttacggtattaaagtagaaccataaaacataagccgggttagttgaatgtactgttgccag |
297 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725065 |
gcgtaatttactaatttcggaaattgactttgggaaattttacggtattaaagtagaaccataaaacataagccgggttagttgaatgtactgttgccag |
38724966 |
T |
|
| Q |
298 |
ttcgtactaaacttttttctgtctctctctctaactctaactctaac------aaacaagtacccttttcgttgaattttccaatctaacaagtgccagt |
391 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724965 |
ttcgtactaaatttttttctgtttctctctctaactctaactctaactctaacaaacaagtacccttttcgttgaattttccaatctaacaagtgccagt |
38724866 |
T |
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| Q |
392 |
gaaatgtgatcttgcttccacacccaaacctaaaccttgtctgtgct |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724865 |
gaaatgtgatcttgcttccacacccaaacctaaaccttgtctgtgct |
38724819 |
T |
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