View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_low_5 (Length: 429)
Name: NF3017_low_5
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 50967297 - 50967694
Alignment:
| Q |
17 |
tgaacatgtttgggttctcattgtttagaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaac |
116 |
Q |
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| T |
50967297 |
tgaacatgtttgggtactcattgtttagaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaac |
50967396 |
T |
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| Q |
117 |
ttgacaaactcatttacttgtatgaaattatggatgaataaaaaattatttcatcaaagaatattaatatattatcattaagtgatcagacagaatcata |
216 |
Q |
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| T |
50967397 |
ttgacaaactcatttacttgtatgaaattatggatgaataaaaaattatttcatcaaagaatattaatatattatcattaagtgatcagacagaatcata |
50967496 |
T |
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| Q |
217 |
atgtcactgcagtttatatcaactgtacaaaagctgctgaaaactgtattgtatcaaataaaacatgtcgaaaccgttataagtgaaattatcaatttgg |
316 |
Q |
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| T |
50967497 |
atgtcactgcagtttatatcaactgtacaaaagctgctgaaaactgtattgtatcaaataaaacatgtcgaatccgttataagtgaaattatcaatttgg |
50967596 |
T |
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| Q |
317 |
agagtttacactttaattcaattacaagattgggagaaagggaggctagttgtaaaaggtattaatgcccggagaagcatgtagttggcaacaataat |
414 |
Q |
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| T |
50967597 |
agagtttacactttaattcaattacaagattgggagaaagggaggctagttgtaaaaggtattaatgcccggagaagcatgtagttggcaacaataat |
50967694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 50997306 - 50997547
Alignment:
| Q |
17 |
tgaacatgtttgggttctcattgtttagaagaatcataagttattgtcaaatcaattgactttttctttttcaagtgttatggctccaagtatttgtaac |
116 |
Q |
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|||| ||||||||| |||||||| |||| ||||| |||||||||| |||||||| ||||||||| | | ||| | ||||||||||| ||||||||| |
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| T |
50997306 |
tgaaaatgtttgggaactcattgtctagaggaatc-taagttattgccaaatcaactgactttttttct---aagagctatggctccaaatatttgtaag |
50997401 |
T |
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| Q |
117 |
ttgacaaactcatttacttgtatgaaattatggatgaataaaaaattatttcatcaaagaatattaatatattatcattaagtgatcagacagaatcata |
216 |
Q |
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|||||||||||||||||| ||||| |||| ||||||| ||| | |||||| ||||| | ||||||| | |||| | ||| ||||||| |
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| T |
50997402 |
ttgacaaactcatttactagtatgg------ggat-aataaaa---tatgttgtcaaagg---ttaatttgctatcattgaatgattaaacaaaatcata |
50997488 |
T |
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| Q |
217 |
atgtcactgcagtttatatcaactgtacaaaagctgctgaaaactgtattgtatcaaat |
275 |
Q |
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| T |
50997489 |
atgtcacagcagtttatatcatttgtacaaaagttgctgaaaactgtattatatcaaat |
50997547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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