View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_low_6 (Length: 418)
Name: NF3017_low_6
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 167 - 404
Target Start/End: Original strand, 6564789 - 6565026
Alignment:
| Q |
167 |
gttggtcttacccttcggccccgaggaaatggactctcgtaatttggatatgataagtaaagactggtcaaagattattcatgccatagtctaaacttgc |
266 |
Q |
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| T |
6564789 |
gttggtcttacccttcggccccgaggaaatggactctcgtaatttggatatgataagtaaagactggtcaaagattattcatgccatagtctaaacttgc |
6564888 |
T |
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| Q |
267 |
gtactcgtggtcaatttgattttcaccgaaactcatggactacttaagtctaaccacttggttttgaatataggcttctcatgaagtaacataacatctc |
366 |
Q |
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| T |
6564889 |
gtactcgtggtcaatttgattttcaccgaaactcatcgactacttaagtctaaccacttggttttgaatataggcttctcatgaagtaacataacatctc |
6564988 |
T |
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| Q |
367 |
ttagaaaaattgagaaaaataagaaattggtttaaaag |
404 |
Q |
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| T |
6564989 |
ttagaaaaattgagaaaaataagaaattggtttaaaag |
6565026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6564610 - 6564655
Alignment:
| Q |
1 |
actcttcaggtaatcaatcaaacttccttcaaaaaacggcaaacta |
46 |
Q |
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| T |
6564610 |
actcttcaggtaatcaatcaaacttccttcaaaaaacggcaaacta |
6564655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 6564718 - 6564761
Alignment:
| Q |
109 |
ggtttgattgtaaggtcttaagaaacaaatgaccatttaaggtt |
152 |
Q |
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| T |
6564718 |
ggtttgattgtaaggtcttaagaaacaaatgaccatttaaggtt |
6564761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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