View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_low_9 (Length: 363)
Name: NF3017_low_9
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 4393784 - 4394131
Alignment:
| Q |
16 |
aaaatgttactacccttcttccaccaccacaagtaactgcaccaactaccgagactttcttcttcccggtgcaacatcatggacaaggaatagtgcttcc |
115 |
Q |
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| T |
4393784 |
aaaatgttactacccttcttccaccaccacaagtaactgcaccaactactgagactttcttcttcccggtgcaacatcatggacaaggaatagtgcttcc |
4393883 |
T |
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| Q |
116 |
taacaatgttacatcacaagggttttgcttctctgaactttccaacatggttcctgctcaatcacatggtcagcaacaccataacactggtaattgcact |
215 |
Q |
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| T |
4393884 |
taataatgttacatcacaagggttttgcttctctgaactttccaacatggttcctgctcaatcacatggtcagcaacaccataacactggtaattgcact |
4393983 |
T |
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| Q |
216 |
accagtttcctgcttagtgagatcatgaacaaccatggtgttaattcctcaaagaaagatcaagaacaggataagtccgtgaaaataatgcaccaaatcc |
315 |
Q |
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| T |
4393984 |
accagtttcctgcttagtgagatcatgaacaaccatggtgttaattcctcaaagaaagatcaagaacaggataagtctgtgaaaataatgcaccaaatcc |
4394083 |
T |
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| Q |
316 |
ccccacatctgaacatctgtttgccacccgccacaactactactactg |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4394084 |
ccccacatctgaacatctgtttgccacccgccacaactactactactg |
4394131 |
T |
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