View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_high_1 (Length: 719)

Name: NF3018_high_1
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_high_1
NF3018_high_1
[»] chr4 (1 HSPs)
chr4 (12-704)||(31449153-31449845)


Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 12 - 704
Target Start/End: Original strand, 31449153 - 31449845
Alignment:
Q  12 atgaaggtaccaggcatgttggtggagggacaatgtgctcatagataatgtggcgacactaccatggcgagtcccgcgcccaaaccactgaatctagaag 111  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  31449153 atgaaagtaccaggcatgttgatggagggacaatgtgcgcatagatcctgtggcaacactaccatggcgagtcccgcacccaaaccactgaatctagaag 31449252  T
Q  112 attctgtgaacagggaggggcatgagaaaatgaatatgtaggagagggaagttgcaagtgggtcggaccaagccattgtcaacctcgaagcttccaggcg 211  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31449253 attctgtgaacagggagggacatgagaaaatgaatatgtaggagagggaagttgcaagtgggtcggaccaagccattgtcaacctcgaagcttccaggcg 31449352  T
Q  212 ccgttacgacaaccagggagtggctgagtctgacgtcgttgtcactgttgcaaacagaggcatacgctgcttgcgaggaagaagacagattgacggagaa 311  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31449353 ccgttacgacaaccagggagtggctgagtctgacgtcattgtcactggtgcaaacagaggcatacactgcttgcgaggaagaagacagattgacggagaa 31449452  T
Q  312 aggagaaaggagtgtgttctgtgagttaggtccaaatcttgacctaatgagccgagcccgtatttagtttaacttcttgagggtggtatctagtctttgg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  31449453 aggagaaaggagtgtgttctgtgagttaggtccaaatcttgacctaatgagccgagcccgtatttagtttaacttcttgaggatggtatctagtatttgg 31449552  T
Q  412 gctggagttaagctactggttttggcctgctagtagcccaagttttgtgataagcctactatccttttacaagagaataaaaaagaatgcttattgcctc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31449553 gctggagttaagctactggttttggcctgctagtagcccaagttttgtgataagcctactatccttttacaagagaataaaaaagaatgcttattgcctc 31449652  T
Q  512 tgatgtatctccagtttctcagaagacaaggtcggttcttgagggcaaggttgtttataagatggtggcattgatagataggacatctatgcatattcta 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  31449653 tgatgtatctccagtttctcagaagacaaggtcggttcttgagggcaaggttgtttataagacggtggcattgatagataggacatttatgcatattcta 31449752  T
Q  612 gaagaaagtggcaccatggtnnnnnnnnnnnnagtgagtttgttagtaaggtttcataagaggtatgtgattctattagatagagggtaatat 704  Q
    ||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31449753 gaagaaagtggcaccatggtgggggtggggggagtgagtttgttagtaaggtttcataagaggtatgtgattctattagatagagggtaatat 31449845  T

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