View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_10 (Length: 500)
Name: NF3018_high_10
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 4 - 492
Target Start/End: Complemental strand, 837557 - 837079
Alignment:
| Q |
4 |
gcagtctctgttgttcagatagaaccctgggacgttaagaaaacatgaaatataaataggaaaagctaaaaaccctagcacgctatttataggttttcta |
103 |
Q |
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| T |
837557 |
gcagtctctgttgtttagatagaaccctcggacgttaagaaaacatgaaatataaataggaaaagctaaaaaccctagcacgctatttataggttttcta |
837458 |
T |
|
| Q |
104 |
tgtggccgcatatagtacgactttgttaggggggcttaaatgatatttttctcgtggtcaatttattattggaacccaaaaaggaaaattacattctacg |
203 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
837457 |
tgtgaccgtatatagtacgactttgttaggggggcttaaatgatatttttctcgtggtcaatttattattggaacccaaaaaggaaaattacattctacg |
837358 |
T |
|
| Q |
204 |
gaaggatgttcccgcataatcagatgctagaaggtctgtgtggcggtggagaagcagatcatgagatcctcatgatctgaggatgaagaagctctaaact |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
837357 |
gaaggatgttcccgcataatcagatgctagaaggtctgtttggcggtggagaagcagatcatga---------gatctgaggatgaagaagctctaaact |
837267 |
T |
|
| Q |
304 |
ttgctaagaagttagcacaactattgcatacacaaagagtgtgaacaattgatatggtccgatcaaagttgagaagatcgttgatgtcttaaattagact |
403 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
837266 |
ttgctaag-agtcagcacaactattgcatacacaaagagtgtgaacaattgatatggtccgatcaaagttgagaagatcattgatgtcttaaattagact |
837168 |
T |
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| Q |
404 |
aacatattcgtggcatcaagaaatttgccccttgagaatataaagtggaaagagttcaaatagcaaataacatcttgaagattcatctc |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
837167 |
aacatattcgtggcatcaagaaatttgccccttgagaatataaagtggagagagttcaaatagcaaataacatcttgaagattcatctc |
837079 |
T |
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