View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_11 (Length: 469)
Name: NF3018_high_11
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 128 - 459
Target Start/End: Original strand, 8438910 - 8439240
Alignment:
| Q |
128 |
aatcacaactttttgacaaactaacacaaaggaaagttcattgtgaatacgaaatttgtatgtgcaaaactttaagaggcatgtctgtgtaacacaagca |
227 |
Q |
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| T |
8438910 |
aatcacaactttttgacaaactaacacaaaggaaagttcattgtgaatacgaaatttgtatgtgcaaaactttaagaggcatgtctgtgtaacacaagca |
8439009 |
T |
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| Q |
228 |
acatgagatttttaattagtcaattcccaacgcgtagtaatcgatttgagttggaccctccactgaaaactgacattgaaattcatcaccataatctcta |
327 |
Q |
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| T |
8439010 |
acatgagatttttaattagtcaattcccaacgcgtagtaatcgatttgagttggaccctccactgaaaactgacattgaaattcatcaccataatctcta |
8439109 |
T |
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| Q |
328 |
gagcaagatccttctgtgaccatcatagccatgctttctcaatcagagacccatttaaggcccatgcctcgagagttcgtgttcaaatcaattacttttc |
427 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8439110 |
gagcaa-atccttctgtgaccatcatagccatgctttctcaatcagagacccatttaaggcccatgcctcgagagttcgtgttcaaattaattacttttc |
8439208 |
T |
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| Q |
428 |
catcactttcatttctttgtagcagtattctt |
459 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8439209 |
catcactttcatttctttgtagcagtattctt |
8439240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 8438776 - 8438888
Alignment:
| Q |
18 |
gtctctgtggcatcctgtgaagaattaatgaacatctttcattgattaaaaaagtaacaacaagtctcaatcagaacttggtaaacaagctagctaatat |
117 |
Q |
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| T |
8438776 |
gtctctgtggcatcctgtgaagaattaatgaacatctttcattgattaaaaaagtaacaacaagtctcaatcagaacttggtaaacaagctagctaatat |
8438875 |
T |
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| Q |
118 |
agccaataaaaat |
130 |
Q |
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| T |
8438876 |
agccaataaaaat |
8438888 |
T |
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