View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_12 (Length: 459)
Name: NF3018_high_12
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 441
Target Start/End: Original strand, 47623427 - 47623851
Alignment:
| Q |
17 |
aatgttaactgaaccatcatatggaagtaaagcactatcagataaaccaatggagagaccttgtccatataacaaatacagttgacagtcagaaatttta |
116 |
Q |
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| T |
47623427 |
aatgttaactgaaccatcatatggaagtaaagcactatcagataaaccaatggagagaccttgtccatataacaaatacagttgacagtcagaaatttta |
47623526 |
T |
|
| Q |
117 |
ggtgtttgttatgatcaactgattgcatgtcattaatgtactttaggtctaagggaaacttgtacagaggagatcccaagatagaagaacctaactcctt |
216 |
Q |
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| T |
47623527 |
ggtgtttgttatgatcgactgattgcatgtcattaatgtactttaggtctaagggaaacttgtacagaggagatcccaagatagaagaacctaactcctt |
47623626 |
T |
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| Q |
217 |
tgtgacggcatctataaaccgaagggaagtataatacacatcataattttcacttccatctgagtataaatcttcacatgctattttgacaaatgttagt |
316 |
Q |
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| T |
47623627 |
tgtgacggcatctataaaccgaagggaagtataatacacatcataattttcacttccatctgagtataaatcttcacatactattttgacaaatgttagt |
47623726 |
T |
|
| Q |
317 |
aatgtgttcaagcagcatataacagcatcataattggtagatggactttccatgtccagcttgactcctttcagaacatatttaaatatctttaaggcag |
416 |
Q |
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| T |
47623727 |
aatgtgttcaagcagcatataacagcatcataattggtagatggactttccatgtccagcttgactcctttcagaacatatttaaatatctttaaggcag |
47623826 |
T |
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| Q |
417 |
catcataaacatgacttctgtgatc |
441 |
Q |
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| T |
47623827 |
catcataaacatgacttctgtgatc |
47623851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 132 - 312
Target Start/End: Complemental strand, 52887434 - 52887247
Alignment:
| Q |
132 |
caactgattgcatgtcattaatgtactttaggtctaagggaaacttgtacagaggagatcccaagatagaagaacctaactcctttgtgacggcat---- |
227 |
Q |
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| T |
52887434 |
caactgattgcatatccttaatgtattttaggtctaaggaaaacttgtaaagaggatatcctaagatagaagaacctaactcctttgagatagcatctat |
52887335 |
T |
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| Q |
228 |
---ctataaaccgaagggaagtataatacacatcataattttcacttccatctgagtataaatcttcacatgctattttgacaaatgt |
312 |
Q |
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| T |
52887334 |
ggactatgaaccgaagggaagtataatacacatcatacttttcacttccatatgagtataaatcttcacatactttttccacaaatgt |
52887247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 52887236 - 52887186
Alignment:
| Q |
378 |
tgactcctttcagaacatatttaaatatctttaaggcagcatcataaacat |
428 |
Q |
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| T |
52887236 |
tgactcctttcagaacatatttaaataatttcaaggcaacatcataaacat |
52887186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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