View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_high_13 (Length: 424)

Name: NF3018_high_13
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_high_13
NF3018_high_13
[»] chr4 (2 HSPs)
chr4 (13-424)||(20686082-20686493)
chr4 (13-362)||(20661928-20662275)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Original strand, 20686082 - 20686493
Alignment:
Q  13 agcacagattggttaaatgtgaattgagcaactagtacatacgagcataaaactaattgatctaataagtattacttgaatcccagcatggctgttcaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20686082 agcacagattggttaaatgtgaattgagcaactagtacatacgagcataaaactaattgatctaataagtattacttgaatcccagcatggctgttcaga 20686181  T
Q  113 taaaaatcaaattccctgggatggcaaatggttgtgtctaccacagttcctttgacaaaatttcaaacnnnnnnntcagtacatatagataaattggaat 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  20686182 taaaaatcaaattccctgggatggcaaatggttgtatctaccacagttcctttgacaaaatttcaaacaaaaaaatcagtacatatagataaattggaat 20686281  T
Q  213 gagaacagataccagttgtagggcaggcaagaaataaattgaaaaacctggcattatgtttccacttttatccgtctgatcagaactgaccggaaagaat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20686282 gagaacagataccagttgtagggcaggcaagaaataaattgaaaaacctggcattatgtttccacttttatctgtctgatcagaactgaccggaaagaat 20686381  T
Q  313 cgggtgtgatgtctcttttggacaaccacaaatgtaacttttggcagatacccctcttcaaatgaggcacaagcctgagaccgaattgaaaaattcatca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20686382 cgggtgtgatgtctcttttggacaaccacaaatgtaacttttggcagatacccctcttcaaatgaggcacaagcctgagaccgaattgaaaaattcatca 20686481  T
Q  413 aaaatagaatgc 424  Q
    ||||||||||||    
T  20686482 aaaatagaatgc 20686493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 20661928 - 20662275
Alignment:
Q  13 agcacagattggttaaatgtgaattgagcaactagtacatacgagcataaaac--taattgatctaataagtattacttgaatcccagcatggctgttca 110  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||| ||   |||| || ||| |||||||||||||||||||||||||||||||||    
T  20661928 agcacagaatggttaaatgccaattgagcaactagtacatacgagcatataaagttaatggaactagtaagtattacttgaatcccagcatggctgttca 20662027  T
Q  111 gataaaaatcaaattccctgggatggcaaatggttgtgtctaccacagttcctttgacaaaatttcaaacnnnnnnntcagtacatatagataaattgga 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||        |||||| |||||||||||||||     
T  20662028 gataaaaatcaaattccctgggatggcaaatggttgtgtcaaccacagttcctttgacaaaatttaaaagaacgtaatcagtaaatatagataaattggc 20662127  T
Q  211 atgagaacagataccagttgtagggcaggcaagaaataaattg-aaaaacctggcattatgtttccacttttatccgtctgatcagaactgaccggaaag 309  Q
    |  |||     |||  | || |  ||| |||| ||| |||||| |||||||||||||||| ||||||||   ||| ||||| ||   |||    ||||||    
T  20662128 aaaaga----gtacacgctgca-tgcaagcaataaaaaaattgaaaaaacctggcattatatttccactccgatctgtctggtcgttactcgtgggaaag 20662222  T
Q  310 aatcgggtgtgatgtctcttttggacaaccacaaatgtaacttttggcagata 362  Q
    |  ||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  20662223 agacgggtgtgatgtctcttttggaccaccacaaaagtaactcttggcagata 20662275  T

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