View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_14 (Length: 420)
Name: NF3018_high_14
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 404
Target Start/End: Complemental strand, 4037057 - 4036663
Alignment:
| Q |
9 |
ttggatttggagtggatactcggtaaagtaacattcaaagaaaacgtaggaagcaagaaaaaggatatgtgacgcaaatatatacataaacataaacatc |
108 |
Q |
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| T |
4037057 |
ttggatttggagtggatactcggtaaagtaacattcaaagaaaacgtaggaagcaagaaaaagtatatgtgatgcaaatatatacataaacag------c |
4036964 |
T |
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| Q |
109 |
atgatttcagtgacaatttatatagctacgtgaataatctacaaaatatctgaaatttagatagtattcacgtgttcttatgaatttctcttgcattagt |
208 |
Q |
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| T |
4036963 |
atgatttcagtgagaatttata--gctacgtgaataatcta-aaaatatctgaaatttagatagtattcacgagttcttatgaatttctcttgcattagt |
4036867 |
T |
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| Q |
209 |
aagtcataatttgaagataaatgtcaatgcaataatgtcacgtaggg--------atactatatctatttaaacattattgttatcattatatggattat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4036866 |
aagtcataatttgaagataaatgtcaatgcaataatgtcacgtaggggacataggatactatatctatttaaacattattgttatcattatatggattat |
4036767 |
T |
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| Q |
301 |
ggaattttataaattggaaataggattgttcatgcgggtcttgaggaagaagatgaccattgaccaatcagatgtgacaatgacaaatacctttcttagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4036766 |
ggaattttataaattggaaataggattgttcatgcgggtcttgaggaagaagatgaccattgaccaatcagatgtgacaatgacaaatacctttcttagt |
4036667 |
T |
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