View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_high_23 (Length: 367)

Name: NF3018_high_23
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_high_23
NF3018_high_23
[»] chr4 (16 HSPs)
chr4 (1-357)||(836566-836918)
chr4 (251-315)||(11383232-11383296)
chr4 (246-282)||(7700644-7700680)
chr4 (250-282)||(670487-670519)
chr4 (246-282)||(9280285-9280321)
chr4 (246-282)||(18780642-18780678)
chr4 (246-282)||(24319419-24319455)
chr4 (246-282)||(24574867-24574903)
chr4 (246-282)||(56078788-56078824)
chr4 (246-281)||(42430364-42430399)
chr4 (250-288)||(15726569-15726607)
chr4 (249-282)||(19615035-19615068)
chr4 (246-279)||(23695618-23695651)
chr4 (247-288)||(35747636-35747677)
chr4 (246-282)||(31567847-31567883)
chr4 (246-282)||(42414257-42414293)
[»] chr2 (6 HSPs)
chr2 (229-340)||(32631556-32631666)
chr2 (245-340)||(17199832-17199926)
chr2 (246-282)||(16672373-16672409)
chr2 (246-281)||(22596714-22596749)
chr2 (246-282)||(21352009-21352045)
chr2 (246-278)||(29772572-29772604)
[»] chr1 (11 HSPs)
chr1 (246-299)||(40211253-40211306)
chr1 (246-282)||(5559745-5559781)
chr1 (246-282)||(14462062-14462098)
chr1 (246-278)||(28655942-28655974)
chr1 (247-288)||(7005054-7005095)
chr1 (246-282)||(24063609-24063645)
chr1 (246-278)||(31088614-31088646)
chr1 (246-282)||(33111394-33111430)
chr1 (246-282)||(33719292-33719328)
chr1 (246-282)||(35671807-35671843)
chr1 (246-282)||(41198207-41198243)
[»] chr3 (11 HSPs)
chr3 (246-282)||(19636255-19636291)
chr3 (246-282)||(48082593-48082629)
chr3 (247-288)||(32033752-32033793)
chr3 (246-282)||(1030841-1030877)
chr3 (244-314)||(31938503-31938573)
chr3 (25-67)||(38379420-38379462)
chr3 (247-288)||(34711583-34711624)
chr3 (250-282)||(29283341-29283373)
chr3 (246-282)||(37282357-37282393)
chr3 (246-282)||(39716954-39716990)
chr3 (246-282)||(48973449-48973485)
[»] chr5 (9 HSPs)
chr5 (247-288)||(20209746-20209787)
chr5 (252-288)||(1274173-1274209)
chr5 (246-282)||(40987700-40987736)
chr5 (253-288)||(16038229-16038264)
chr5 (246-282)||(1495577-1495613)
chr5 (261-313)||(7016181-7016233)
chr5 (246-282)||(7946480-7946516)
chr5 (246-282)||(13555130-13555166)
chr5 (246-282)||(17342167-17342203)
[»] chr8 (9 HSPs)
chr8 (246-282)||(1265466-1265502)
chr8 (246-282)||(6345657-6345693)
chr8 (246-282)||(10182920-10182956)
chr8 (246-282)||(26720867-26720903)
chr8 (246-282)||(31126970-31127006)
chr8 (246-282)||(37948654-37948690)
chr8 (246-282)||(43619749-43619785)
chr8 (246-282)||(13471225-13471261)
chr8 (247-279)||(42199795-42199827)
[»] chr7 (8 HSPs)
chr7 (246-282)||(1576204-1576240)
chr7 (246-282)||(8080884-8080920)
chr7 (246-282)||(27392945-27392981)
chr7 (243-326)||(30816551-30816634)
chr7 (259-288)||(2116021-2116050)
chr7 (246-279)||(40305818-40305851)
chr7 (243-314)||(19221209-19221281)
chr7 (246-282)||(36482362-36482398)
[»] chr6 (6 HSPs)
chr6 (246-282)||(7607992-7608028)
chr6 (246-282)||(16705074-16705110)
chr6 (252-282)||(3900840-3900870)
chr6 (250-282)||(4463885-4463917)
chr6 (246-282)||(29174965-29175001)
chr6 (246-282)||(30395925-30395961)
[»] scaffold0396 (1 HSPs)
scaffold0396 (246-282)||(975-1011)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 836566 - 836918
Alignment:
Q  1 tcatcaacaatgt-agcgtgtgttatatcaatgtactttaccaatttgaataaacaaatattgtttattagannnnnnnnnaataaagttgctatattag 99  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  836566 tcatcgacaatgtgagcgtgtgttatatcaatgtactttaccaatttgaataaacaaatattgtttattagatttttttt-aataaagttgctatattag 836664  T
Q  100 cccctaacaaggaattgcttaatgaacagagtagagttgttcatggtgatcagttataaggacaaaaatatcatcaaatccaaaaatttaaatactctcg 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  836665 cccctaacaaggaattgcttaatgaacagagtagaggtgttcatggtgatcagttataaggacaaaaatatcattaaatccaaaaatttaaatactctcg 836764  T
Q  200 caggtaaatttggattatgattnnnnnnnttgatccagtctacttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaa 299  Q
    |||    ||||||||||| |||       ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  836765 cag----atttggattatcattaaaaaaattgatccagtctacttttatgcggtttaatttgaatcgatttttcgatatccaatttacaattttgtgaaa 836860  T
Q  300 aaatctattaaaattactactataaagtcacgataaaatcaagttgaaatattatctc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  836861 aaatctattaaaattactactataaagtcacgataaaatcaagttgaaatattatctc 836918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 11383296 - 11383232
Alignment:
Q  251 ggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaatta 315  Q
    |||||| |||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||||    
T  11383296 ggtttagtttggatcaatttttggatatcaaaattataattttgtgaaaaaatctattaaaatta 11383232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 7700680 - 7700644
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||||||||||||||    
T  7700680 tatgcggtttaatttggatcgatttttggatatccaa 7700644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 670487 - 670519
Alignment:
Q  250 cggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||||||||||    
T  670487 cggtttaatttggatcgatttttggatatccaa 670519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 9280321 - 9280285
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9280321 tatgcggtttaatttggatcggtttttggatatccaa 9280285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 18780642 - 18780678
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||| ||||||||||||||||    
T  18780642 tatgcggtttaatttggatcaatttttggatatccaa 18780678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 24319455 - 24319419
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24319455 tatgcggtttaatttggatcggtttttggatatccaa 24319419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 24574867 - 24574903
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  24574867 tatgcggtttaatttggatcggtttttggatatccaa 24574903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 56078824 - 56078788
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||||||| ||||||    
T  56078824 tatgcggtttaatttggatcgatttttggacatccaa 56078788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 42430399 - 42430364
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatcca 281  Q
    |||||||||||||||||||||||||||||| |||||    
T  42430399 tatgcggtttaatttggatcgatttttggacatcca 42430364  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 15726569 - 15726607
Alignment:
Q  250 cggtttaatttggatcgatttttggatatccaatttaca 288  Q
    ||||||||||||||||| ||||||||||||||| |||||    
T  15726569 cggtttaatttggatcggtttttggatatccaaattaca 15726607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 19615068 - 19615035
Alignment:
Q  249 gcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||| |||||||    
T  19615068 gcggtttaatttggatcgatttttggttatccaa 19615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Original strand, 23695618 - 23695651
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatc 279  Q
    ||||||||||||||||||||| ||||||||||||    
T  23695618 tatgcggtttaatttggatcggtttttggatatc 23695651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 35747677 - 35747636
Alignment:
Q  247 atgcggtttaatttggatcgatttttggatatccaatttaca 288  Q
    |||||||||||||||||||| |||||||||||| || |||||    
T  35747677 atgcggtttaatttggatcggtttttggatatcaaaattaca 35747636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 31567847 - 31567883
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||| |||||||||| |||||||||||||||    
T  31567847 tatgcggttttatttggatcggtttttggatatccaa 31567883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 42414257 - 42414293
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  42414257 tatgcggtttaatttggatcggtttttggatgtccaa 42414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 32631666 - 32631556
Alignment:
Q  229 ttgatccagtctacttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaagtc 328  Q
    ||||| || |||| ||||||||||||||||||||||   |||||||| |||||| ||||| ||||||| |||||||||||||||||| || ||| ||| |    
T  32631666 ttgatacaatctaattttatgcggtttaatttggatatgtttttggacatccaaattacaattttgtggaaaaatctattaaaattaatattat-aagac 32631568  T
Q  329 acgataaaatca 340  Q
    ||||||||||||    
T  32631567 acgataaaatca 32631556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 17199832 - 17199926
Alignment:
Q  245 ttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaagtcacgataaaatca 340  Q
    ||||||| |||| ||||||| || |||||||||| ||| ||||||||||||| |||||| ||||||||||| || ||||||| ||||| |||||||    
T  17199832 ttatgcgttttagtttggattgacttttggatatacaaattacagttttgtg-aaaaatatattaaaattattattataaagacacgaaaaaatca 17199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 16672409 - 16672373
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16672409 tatgcggtttaatttggatcggtttttggatatccaa 16672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 22596749 - 22596714
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatcca 281  Q
    |||||||||||||||||||||||||||||| |||||    
T  22596749 tatgcggtttaatttggatcgatttttggacatcca 22596714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 21352009 - 21352045
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  21352009 tatgcggtttaatttggatcggtttttggatgtccaa 21352045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 29772604 - 29772572
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatat 278  Q
    ||||||||||||||||||||| |||||||||||    
T  29772604 tatgcggtttaatttggatcggtttttggatat 29772572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 40211253 - 40211306
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaa 299  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||| |||||    
T  40211253 tatgcggtttagtttggatcgatttttggatatccaaattacaattttatgaaa 40211306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 5559781 - 5559745
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||| ||||||||||||||||||||||||||||||||    
T  5559781 tatgtggtttaatttggatcgatttttggatatccaa 5559745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 14462098 - 14462062
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14462098 tatgcggtttaatttggatcggtttttggatatccaa 14462062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 28655974 - 28655942
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatat 278  Q
    |||||||||||||||||||||||||||||||||    
T  28655974 tatgcggtttaatttggatcgatttttggatat 28655942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 7005095 - 7005054
Alignment:
Q  247 atgcggtttaatttggatcgatttttggatatccaatttaca 288  Q
    ||||||||||||||||||||| |||||||| ||||| |||||    
T  7005095 atgcggtttaatttggatcgaattttggatgtccaaattaca 7005054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 24063609 - 24063645
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||| | |||||||||||||||    
T  24063609 tatgcggtttaatttggattggtttttggatatccaa 24063645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 31088614 - 31088646
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatat 278  Q
    ||||||||||||||||| |||||||||||||||    
T  31088614 tatgcggtttaatttggttcgatttttggatat 31088646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 33111430 - 33111394
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||  ||||||||||||||||||||    
T  33111430 tatgcggtttaatttaaatcgatttttggatatccaa 33111394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 33719292 - 33719328
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  33719292 tatgcggtttaatttggatcggtttttgaatatccaa 33719328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 35671807 - 35671843
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  35671807 tatgcagtttaatttggatcggtttttggatatccaa 35671843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 41198207 - 41198243
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||| |||||||||||||| |||||||||||||||    
T  41198207 tatgcgatttaatttggatcggtttttggatatccaa 41198243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 19636255 - 19636291
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||||||||||||||    
T  19636255 tatgcggtttaatttggatcgatttttggatatccaa 19636291  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 48082593 - 48082629
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||||||||||||||    
T  48082593 tatgcggtttaatttggatcgatttttggatatccaa 48082629  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 32033752 - 32033793
Alignment:
Q  247 atgcggtttaatttggatcgatttttggatatccaatttaca 288  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  32033752 atgcggtttaatttggatcggtttttggatatccaaattaca 32033793  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 1030877 - 1030841
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1030877 tatgcggtttaatttggatcgatttttggatgtccaa 1030841  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 31938503 - 31938573
Alignment:
Q  244 tttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaatt 314  Q
    ||||||| ||||| |||||||||||| || ||||||||| | ||| |||| | |||| |||||||||||||    
T  31938503 tttatgcagtttagtttggatcgattgtttgatatccaaataacaattttttcaaaagatctattaaaatt 31938573  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 38379462 - 38379420
Alignment:
Q  25 tatcaatgtactttaccaatttgaataaacaaatattgtttat 67  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||    
T  38379462 tatcaatgtactttatcaatttgaataaataaatatcgtttat 38379420  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 34711583 - 34711624
Alignment:
Q  247 atgcggtttaatttggatcgatttttggatatccaatttaca 288  Q
    |||| |||||| |||||||||||||||||||||||| |||||    
T  34711583 atgcagtttaaattggatcgatttttggatatccaaattaca 34711624  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 29283373 - 29283341
Alignment:
Q  250 cggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||| |||||||||||||||    
T  29283373 cggtttaatttggatcggtttttggatatccaa 29283341  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 37282357 - 37282393
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||| | |||||||||||||||    
T  37282357 tatgcggtttaatttggattggtttttggatatccaa 37282393  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 39716954 - 39716990
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  39716954 tatgcggtttattttggatcgatttttggacatccaa 39716990  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 48973449 - 48973485
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  48973449 tatgcggtttaatttggatcggttttttgatatccaa 48973485  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 20209746 - 20209787
Alignment:
Q  247 atgcggtttaatttggatcgatttttggatatccaatttaca 288  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  20209746 atgcggtttaatttggatcaatttttggatatccaaattaca 20209787  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 1274173 - 1274209
Alignment:
Q  252 gtttaatttggatcgatttttggatatccaatttaca 288  Q
    ||||||||||||||||||||||||||||||| |||||    
T  1274173 gtttaatttggatcgatttttggatatccaaattaca 1274209  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 40987736 - 40987700
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  40987736 tatgcggtttaatttggatcggtttttggatatccaa 40987700  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 288
Target Start/End: Original strand, 16038229 - 16038264
Alignment:
Q  253 tttaatttggatcgatttttggatatccaatttaca 288  Q
    |||||||||||||||||||||||||||||| |||||    
T  16038229 tttaatttggatcgatttttggatatccaaattaca 16038264  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 1495577 - 1495613
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  1495577 tatgcggtttaatttggatcggtttttggacatccaa 1495613  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 7016233 - 7016181
Alignment:
Q  261 ggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaat 313  Q
    ||||| ||||||  |||||||| ||||| || |||||||||||||||||||||    
T  7016233 ggatcaattttttaatatccaaattacaattgtgtgaaaaaatctattaaaat 7016181  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 7946480 - 7946516
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  7946480 tatgcggtttaatttggattgattttgggatatccaa 7946516  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 13555166 - 13555130
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  13555166 tatgcggtttaatttagatcggtttttggatatccaa 13555130  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 17342167 - 17342203
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||  ||||||||||||||    
T  17342167 tatgcggtttaatttggatcggattttggatatccaa 17342203  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 1265502 - 1265466
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1265502 tatgcggtttaatttggatcggtttttggatatccaa 1265466  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 6345693 - 6345657
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6345693 tatgcggtttaatttggatcggtttttggatatccaa 6345657  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 10182920 - 10182956
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10182920 tatgcggtttaatttggatcggtttttggatatccaa 10182956  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 26720867 - 26720903
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26720867 tatgcggtttaatttggatcggtttttggatatccaa 26720903  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 31126970 - 31127006
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31126970 tatgcggtttaatttggatcggtttttggatatccaa 31127006  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 37948654 - 37948690
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  37948654 tatgcggtttaatttggatcggtttttggatatccaa 37948690  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 43619749 - 43619785
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  43619749 tatgcggtttaatttggatcggtttttggatatccaa 43619785  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 13471261 - 13471225
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  13471261 tatgcggtttaatttggatcggtttttgaatatccaa 13471225  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 42199795 - 42199827
Alignment:
Q  247 atgcggtttaatttggatcgatttttggatatc 279  Q
    |||||||||||||||||||| ||||||||||||    
T  42199795 atgcggtttaatttggatcggtttttggatatc 42199827  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 1576240 - 1576204
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  1576240 tatgcggtttaatttggatcggtttttggatatccaa 1576204  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 8080920 - 8080884
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  8080920 tatgcggtttaatttggatcggtttttggatatccaa 8080884  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 27392981 - 27392945
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27392981 tatgcggtttaatttggatcggtttttggatatccaa 27392945  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 30816634 - 30816551
Alignment:
Q  243 ttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaaaatctattaaaattactactataaag 326  Q
    |||||||  ||||| |||| || | ||||||||||||||| ||| ||| ||||| |||||||||| ||||||| || |||||||    
T  30816634 ttttatgtagtttagtttgaattggtttttggatatccaaattatagtattgtgtaaaaatctatgaaaattaatattataaag 30816551  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 2116050 - 2116021
Alignment:
Q  259 ttggatcgatttttggatatccaatttaca 288  Q
    ||||||||||||||||||||||||||||||    
T  2116050 ttggatcgatttttggatatccaatttaca 2116021  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 40305851 - 40305818
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatc 279  Q
    |||||||||||||||||||| |||||||||||||    
T  40305851 tatgcggtttaatttggatcaatttttggatatc 40305818  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 19221209 - 19221281
Alignment:
Q  243 ttttatgcggtttaatttggatcgatttttggatatccaatttacagttttgtgaaaa-aatctattaaaatt 314  Q
    ||||||| |||||| ||| ||| | |||| |||||||||| ||||| |||||| |||| ||||||||||||||    
T  19221209 ttttatgtggtttagttttgattggttttgggatatccaaattacaattttgtaaaaaaaatctattaaaatt 19221281  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 36482362 - 36482398
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  36482362 tatgcggtttaatttggatcggttttttgatatccaa 36482398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 7607992 - 7608028
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  7607992 tatgcggtttaatttggatcggtttttggatatccaa 7608028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 16705074 - 16705110
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16705074 tatgcggtttaatttggatcggtttttggatatccaa 16705110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 282
Target Start/End: Original strand, 3900840 - 3900870
Alignment:
Q  252 gtttaatttggatcgatttttggatatccaa 282  Q
    |||||||||||||||||||||||||||||||    
T  3900840 gtttaatttggatcgatttttggatatccaa 3900870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 4463885 - 4463917
Alignment:
Q  250 cggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||| |||||||||||||||    
T  4463885 cggtttaatttggatcggtttttggatatccaa 4463917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 29174965 - 29175001
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  29174965 tatgcggtttaatttggatcggtttttgtatatccaa 29175001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 30395961 - 30395925
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    |||||| |||||||||||||| |||||||||||||||    
T  30395961 tatgcgatttaatttggatcgctttttggatatccaa 30395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 975 - 1011
Alignment:
Q  246 tatgcggtttaatttggatcgatttttggatatccaa 282  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  975 tatgcggtttaatttggatcggtttttggacatccaa 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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