View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_25 (Length: 354)
Name: NF3018_high_25
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_25 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 2927842 - 2928189
Alignment:
| Q |
7 |
catcatcatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgggtactaagaaaacctgtaaa |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2927842 |
catcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatgaatgggtactaagaaaacctgtaaa |
2927941 |
T |
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| Q |
107 |
cataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2927942 |
cataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttaggagccacccgaggatcatagccagctgctgccattagtagaagcccg |
2928041 |
T |
|
| Q |
207 |
atataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaacataagcatatatttaacaaagaagacaacattgaatgacag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2928042 |
atataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaacataagcatatatgtaacaaagaagacaacattgaatgacag |
2928141 |
T |
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| Q |
307 |
aaaggaccattagaacacagcagatgcagcacagaaaaaagccatacc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928142 |
aaaggaccattagaacacagcagatgcagcacagaaaaaagccatacc |
2928189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 2311428 - 2311091
Alignment:
| Q |
7 |
catcatcatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgggtactaagaaaacctgtaaa |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2311428 |
catcattatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgggtactaagaaaacctgtaaa |
2311329 |
T |
|
| Q |
107 |
cataaaatcattgttatgtccgcttaactttcccagctcctcgtagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccg |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2311328 |
cataaaatcattgttatgtctgcttaactttcccagctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccg |
2311229 |
T |
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| Q |
207 |
atataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaacataagcatatatttaacaaagaagacaacattgaatgacag |
306 |
Q |
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| T |
2311228 |
atgtaatcagcttcaaattcaaacatgcaaattgtgaataaagtgggttgagaacaagcataagcatatatgt----aatgagacaacattgaatgacag |
2311133 |
T |
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| Q |
307 |
aaaggaccattagaacacagcagatgcagcacagaaaaaagc |
348 |
Q |
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| T |
2311132 |
aagggaccattagatcatagcagatgcaggacagaaaaaagc |
2311091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 10173717 - 10173789
Alignment:
| Q |
171 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtga |
243 |
Q |
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| T |
10173717 |
ggatcatagccagcggctgccattagtagaagcccaatgtaatccgcttcaaattcacacttgtaaattgtga |
10173789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 1237932 - 1238024
Alignment:
| Q |
171 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaa |
263 |
Q |
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| T |
1237932 |
ggatcatagccaactgctgccattagtagaagcccaatgtaatccgcttcaaattcaaacctgcaaattgtgaataaattggattgagaacaa |
1238024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 29088860 - 29088974
Alignment:
| Q |
167 |
ccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaaca |
266 |
Q |
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|||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||| ||||| ||||||| || || |
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| T |
29088860 |
ccgaggatcatagccagctgatgccattagtagaagcccaatgtaatcaacttcaaattcaaaactgcaaattgtgaatacattggattgagaataagca |
29088959 |
T |
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| Q |
267 |
taagcatatatttaa |
281 |
Q |
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| T |
29088960 |
tgagtatatatttaa |
29088974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 1175509 - 1175417
Alignment:
| Q |
171 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaa |
263 |
Q |
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||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
1175509 |
ggatcatagccagctgctgccatcagtagaagcccaatgtaatcagcttcatattcaaacctgcaaattgtgaataaattttgttgagaacaa |
1175417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 794359 - 794442
Alignment:
| Q |
184 |
ctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaacat |
267 |
Q |
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||||||| ||||||| |||||| || ||||| ||||||||||||||| |||||| |||||| ||||| |||||||||||||| |
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| T |
794359 |
ctgctgcgattagtataagcccaatgtaatcgtattcaaattcaaaccttcaaattatgaatatattggattgagaacaaacat |
794442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 1237769 - 1237847
Alignment:
| Q |
8 |
atcatcatatagaataagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctgatggatgg |
86 |
Q |
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||||| ||||| || ||||||||| | |||||||| ||| |||||| ||||||||||||| ||| |||||||||||| |
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| T |
1237769 |
atcattatataaaagaagagcttccttcattatctctggtcgagccaccgctttggctctttctctacctgatggatgg |
1237847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 23906457 - 23906529
Alignment:
| Q |
150 |
tagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaa |
222 |
Q |
| |
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||||||||||| || ||||| |||||||||||||| | ||| | || |||||||| || ||||||||||||| |
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| T |
23906457 |
tagactttaggtgccacccggggatcatagccagccgatgcaagtaatagaagccgaatgtaatcagcttcaa |
23906529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 29088727 - 29088783
Alignment:
| Q |
22 |
taagagcttcttccattatcttaggttgagccaatgctttggctctttgtcttcctg |
78 |
Q |
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||||||||||||||||||||||||| || ||| |||||| |||||| |||||||| |
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| T |
29088727 |
taagagcttcttccattatcttaggccgaagcaacgctttgactctttctcttcctg |
29088783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 150 - 262
Target Start/End: Original strand, 43286724 - 43286845
Alignment:
| Q |
150 |
tagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgata--------taatcagcttcaaattcaaacctgcaaattgt |
241 |
Q |
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||||||||||| |||| || |||||||||||||| | || |||||||||||||| ||| ||||||||||||||||||| ||| |||||| | |
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| T |
43286724 |
tagactttaggtgcaagtcggggatcatagccagccgatgtcattagtagaagccagattgcccaatgtaatcagcttcaaattcaatcctacaaattat |
43286823 |
T |
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| Q |
242 |
g-aataaattgggttgagaaca |
262 |
Q |
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| |||||||||||||||||||| |
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| T |
43286824 |
gaaataaattgggttgagaaca |
43286845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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