View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_27 (Length: 347)
Name: NF3018_high_27
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_27 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 17109821 - 17110161
Alignment:
| Q |
18 |
acagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagg |
117 |
Q |
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| T |
17109821 |
acagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagg |
17109920 |
T |
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| Q |
118 |
gtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaacttt |
217 |
Q |
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| T |
17109921 |
gtctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaacttt |
17110020 |
T |
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| Q |
218 |
acagattttggggaactgtccattccttttagaaagatgcaagaaaccttatggaa-----------aggattgcgcatattcaatgtataatgattgac |
306 |
Q |
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| T |
17110021 |
acagatttcggggaactgtccattccttttagaaagatgcaagaaaccttatggaaaggattgcgagaggattgcgcatattcaatgtataatgattgac |
17110120 |
T |
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| Q |
307 |
gatcctgagagggaccaacagtcatagtgcccaacaattac |
347 |
Q |
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| T |
17110121 |
gatcctgagagggaccaacagtcatagtgcccaacaattac |
17110161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 17030362 - 17030608
Alignment:
| Q |
19 |
cagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaaggg |
118 |
Q |
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| T |
17030362 |
cagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaaggg |
17030461 |
T |
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| Q |
119 |
tctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaacttta |
218 |
Q |
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| T |
17030462 |
tcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttcaactcta |
17030561 |
T |
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| Q |
219 |
cagattttggggaactgtccattccttttagaaagatgcaagaaacc |
265 |
Q |
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| T |
17030562 |
caaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17030608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 17048700 - 17048946
Alignment:
| Q |
19 |
cagatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaaggg |
118 |
Q |
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| T |
17048700 |
cagatgtggagtcttttcctaatcaagggttgcttcccctctctcttacttatctaaatatccgtggttgtcgaaatctcaaacaacttgactacaaggg |
17048799 |
T |
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| Q |
119 |
tctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaacttta |
218 |
Q |
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| T |
17048800 |
tcttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtcttcctaaatccatttcaactcta |
17048899 |
T |
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| Q |
219 |
cagattttggggaactgtccattccttttagaaagatgcaagaaacc |
265 |
Q |
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| T |
17048900 |
caaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
17048946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 16978491 - 16978736
Alignment:
| Q |
20 |
agatgtggagtcttttcccaatcaagggttgattccactctctcttaccactctaaatatcactggttgtcaaaatctcaaacaacttgactacaagggt |
119 |
Q |
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||||||||||| |||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
16978491 |
agatgtggagttttttcctaatcaagggttgcttcctatctctcttacttatctaaatatttgtggttgtcgaaatctcaaacaacttgactacaagggt |
16978590 |
T |
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| Q |
120 |
ctcgaccacctcccctctctttcatcattaactcttaaaaactgtcccaacataaaacgtttaccgaaggagggtctacctagatccatatcaactttac |
219 |
Q |
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| T |
16978591 |
cttgagaaccttccctctcttagaacattgagtctaaataattgtcccaacatccaatgcttgccaaaggagggtctgcctaaatccatttcaactctac |
16978690 |
T |
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| Q |
220 |
agattttggggaactgtccattccttttagaaagatgcaagaaacc |
265 |
Q |
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| T |
16978691 |
aaatattggggaattgttcactgcttaaacaacgatgcaagaaacc |
16978736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 14313962 - 14314008
Alignment:
| Q |
21 |
gatgtggagtcttttcccaatcaagggttgattccactctctcttac |
67 |
Q |
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| T |
14313962 |
gatgtggagtcttttcccgatcaagggttgcttccacgctctcttac |
14314008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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