View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_34 (Length: 291)
Name: NF3018_high_34
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1432199 - 1432109
Alignment:
| Q |
1 |
atgattatgatgaacagccacaaaaaagatgatgatgcaaacaacaaaaagcaacacatatatgatcatataaatacaatgatcacatcag |
91 |
Q |
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| T |
1432199 |
atgatgattatgaacagccacaaaaaacatgatgatgcaaacaacaaaaagcaacacatatatgatcatataaatacaatgatcacatcag |
1432109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 275
Target Start/End: Complemental strand, 1431943 - 1431914
Alignment:
| Q |
246 |
ttcaataaggtttttccaataatcgatggt |
275 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1431943 |
ttcaataaggtttttccaataatcgatggt |
1431914 |
T |
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