View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_35 (Length: 288)
Name: NF3018_high_35
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 10559411 - 10559152
Alignment:
| Q |
16 |
aatatgtctgggtgtagcagatggagaccatctgctcctcatttgcttaacaaatataaagaaaaatacaaatgtattttgttcaaattataagcaaaag |
115 |
Q |
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| T |
10559411 |
aatatgtctgggtgtagcagatggtgaccatctgctcctcatttgcttaacaaatataaaaaaaaatacaaatgtattttgttcaaattataagcaaaag |
10559312 |
T |
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| Q |
116 |
tcataatatattttgtccaaattataag-aaaattcaaaatgtatttgatccaaatttaattatgatcaaatacattttagttttgcttaaatttaagat |
214 |
Q |
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| T |
10559311 |
tcataatatattttgtccaaattataagaaaaattcaaaatgtatttgatccagatttaattttgatcaaatacattttacttttgcttaaatttaagat |
10559212 |
T |
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| Q |
215 |
tggagagagtttgtacccaaaaaataaattggagagaatattttaccatctttatccatt |
274 |
Q |
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| T |
10559211 |
tggagagagtttgtaccaaaaaaaaaaattggagaaagtattttaccatctttatccatt |
10559152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 45776095 - 45776127
Alignment:
| Q |
141 |
aagaaaattcaaaatgtatttgatccaaattta |
173 |
Q |
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| T |
45776095 |
aagaaaagtcaaaatgtatttgatccaaattta |
45776127 |
T |
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