View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_37 (Length: 275)
Name: NF3018_high_37
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 40784854 - 40785106
Alignment:
| Q |
7 |
agagaagaagaaaatgggtaattcatttgtttaaataagtatctataatgttactgattttgctgacaatattgataacgtttttgatatatttttcata |
106 |
Q |
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| T |
40784854 |
agagaagaagaaaatggttaattcatttgtttaaataagtatctataatgttattgattttgctgacaatattgataacgtttttgatatatttttcata |
40784953 |
T |
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| Q |
107 |
aaataaattaacaagttggtttgcaagtagcatctcttatccaaattgggttaaattttgtgatattattatgatcaatttggtaaataaaatatatatg |
206 |
Q |
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| T |
40784954 |
aaataagttaacaagttggtttgcaagtagcatctcttatccaaattgggttaaattttgtgatattattatgatcaatttggtaaataaaatatatatg |
40785053 |
T |
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| Q |
207 |
gagaactatttttatcaatcaacagcctagctatccacctgctcgtatcatat |
259 |
Q |
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| T |
40785054 |
gagaactatttttatgaatcaacagcctagctatccacctgctcatatcatat |
40785106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 40792294 - 40792432
Alignment:
| Q |
102 |
tcataaaataaattaacaagttggtttgcaagtagca--tctcttatccaaattgggttaaattttgtgatattat--tatgatcaatttggtaaataaa |
197 |
Q |
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| T |
40792294 |
tcataaaataaattaacaagttggtttgcaagtagcaattcttatatccaaatttagttaaattttgtgatatcattatatcatcaatttggt-aatagt |
40792392 |
T |
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| Q |
198 |
atatatatggagaactatttttatcaatcaacagcctagc |
237 |
Q |
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| T |
40792393 |
atatatatgtagaactatttctaccaatcaacagcctagc |
40792432 |
T |
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