View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_40 (Length: 253)
Name: NF3018_high_40
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 6109358 - 6109118
Alignment:
| Q |
3 |
agatatccatgtagcaaaaggacattacacttacattcattttcaatcatgtacctccactgataagctattccttcttcagcttcctttgaagcatcag |
102 |
Q |
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| T |
6109358 |
agatatccatgtagcaaaaggacattacacttacattcattttcaatcatgtacttccactgataagctattccttcttcagcttcctttgaagcatcag |
6109259 |
T |
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| Q |
103 |
aagtgaaaacaagaagtcggcgatttgcttgagccatctgtgttatagtaggccaatcttcaccattttttggcatatcagacacggggaacaaatattt |
202 |
Q |
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| T |
6109258 |
aagtgaaaacaagaagtcggcgatttgcttgagccatctgtgttatagtaggccaatcttcaccattttttggcatatcagacacggggaacaaatattt |
6109159 |
T |
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| Q |
203 |
atccagaccagcatttatgaacagattaatcaacgcctttg |
243 |
Q |
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| T |
6109158 |
atccagaccagcatttatgaacagattaatcaacgcctttg |
6109118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 39065814 - 39066012
Alignment:
| Q |
32 |
cttacattcattttcaatcatgtacctccactgataagctattccttcttcagcttcctttgaagcatcagaagtgaaaacaagaagtcggcgatttgct |
131 |
Q |
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| T |
39065814 |
cttacactcattttcaaccacgtgcttccactgataagctattccttctccagcttccttcgaagcatcagaagtgaaaacaacaagtcggtgatttgct |
39065913 |
T |
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| Q |
132 |
tgagccatctgtgttatagtaggccaatcttcaccattttttggcatatcagacacggggaacaaatatttatccagaccagcatttatgaacagatta |
230 |
Q |
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| T |
39065914 |
tgaaccatctcggttacagtgggccaatcattaccctttttcggcatctttgacacgggaaaccaatacttatccaatccagcacttgtgaaaagatta |
39066012 |
T |
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