View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_high_42 (Length: 252)

Name: NF3018_high_42
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_high_42
NF3018_high_42
[»] chr5 (1 HSPs)
chr5 (53-225)||(15692522-15692689)
[»] chr3 (1 HSPs)
chr3 (65-102)||(32034490-32034527)
[»] chr1 (2 HSPs)
chr1 (52-101)||(40247565-40247614)
chr1 (52-100)||(5559316-5559364)
[»] chr8 (1 HSPs)
chr8 (53-101)||(31127387-31127435)
[»] chr6 (1 HSPs)
chr6 (53-101)||(13531221-13531269)
[»] chr4 (2 HSPs)
chr4 (52-100)||(7700214-7700262)
chr4 (52-100)||(24575292-24575340)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 15692522 - 15692689
Alignment:
Q  53 atcggtttgcaattttaatttggattcgtttggatttgaacacccctatcctctacttccttagagatctaaccttgtacggggcgacaatcttgtttga 152  Q
    |||||||| | ||||||||||||||| ||||||||||||||| | ||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  15692522 atcggtttacgattttaatttggattggtttggatttgaacatctctatcctctgcatccttcgaaatctaaccttgtacggggcgacaatcttgtttga 15692621  T
Q  153 ttattgcattttcttttttgtatataatgccaaacaagagtccttggttaattaagactttcattacgtcata 225  Q
    | ||||||     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15692622 taattgca-----ttttttttatataatgccaaacaagagtccttggttaattaagactttcattacgtcata 15692689  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 32034490 - 32034527
Alignment:
Q  65 ttttaatttggattcgtttggatttgaacacccctatc 102  Q
    |||||||||||||  |||||||||||||||||||||||    
T  32034490 ttttaatttggataggtttggatttgaacacccctatc 32034527  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 40247565 - 40247614
Alignment:
Q  52 aatcggtttgcaattttaatttggattcgtttggatttgaacacccctat 101  Q
    |||| ||||||  |||||||||||||| |||||| |||||||||||||||    
T  40247565 aatcagtttgctgttttaatttggattagtttggttttgaacacccctat 40247614  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 5559364 - 5559316
Alignment:
Q  52 aatcggtttgcaattttaatttggattcgtttggatttgaacaccccta 100  Q
    ||||| ||||| |||||| |||||||  |||||||||||||||||||||    
T  5559364 aatcgatttgcgattttattttggatctgtttggatttgaacaccccta 5559316  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 31127387 - 31127435
Alignment:
Q  53 atcggtttgcaattttaatttggattcgtttggatttgaacacccctat 101  Q
    ||||||||||  ||||| |||||||  ||||||||||||||||||||||    
T  31127387 atcggtttgcggttttattttggatcggtttggatttgaacacccctat 31127435  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 13531269 - 13531221
Alignment:
Q  53 atcggtttgcaattttaatttggattcgtttggatttgaacacccctat 101  Q
    ||||||||||  ||||| |||||||  ||||||||||||||||||||||    
T  13531269 atcggtttgcggttttattttggatcggtttggatttgaacacccctat 13531221  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 7700262 - 7700214
Alignment:
Q  52 aatcggtttgcaattttaatttggattcgtttggatttgaacaccccta 100  Q
    ||||||||| | |||||| |||||||  |||||||||||||||||||||    
T  7700262 aatcggtttacgattttattttggatcggtttggatttgaacaccccta 7700214  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 24575292 - 24575340
Alignment:
Q  52 aatcggtttgcaattttaatttggattcgtttggatttgaacaccccta 100  Q
    |||||||||||  ||||| |||||||  |||||||||||||||||||||    
T  24575292 aatcggtttgcggttttattttggatcggtttggatttgaacaccccta 24575340  T

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