View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_47 (Length: 249)
Name: NF3018_high_47
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 22618003 - 22618225
Alignment:
| Q |
11 |
cataggctagtgaattgggaaattttatttcagaaaatatgccttccaaattgttgaaagacaactctaaattgcgcaggttcaaaagttgaccaaaact |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22618003 |
cataggctagtgacttgggaaattttatttcagaaaacatgccttccatattgtttagagacatgtctaaattgcgcaggttcaaaagttgaccaaaact |
22618102 |
T |
|
| Q |
111 |
atcaggaaattccccttgcaatttattttgactaagatagagggtttgcaaatttgaaagttgaccaatattttgtgggattgtaccattcagagagttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||| |
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| T |
22618103 |
atcaggaaattccccttgcaatttattttgactaagatagagggtttgcaaatttgaaagtcgaccaatattttggggtattgtgccattcagagagttt |
22618202 |
T |
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| Q |
211 |
tctgacacatcaaggttttctag |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
22618203 |
tctgacacatcaaggttttctag |
22618225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 23750610 - 23750829
Alignment:
| Q |
11 |
cataggctagtgaattgggaaattttatttcagaaaatatgccttccaaattgttgaaagacaactctaaattgcgcaggttcaaaagttgaccaaaact |
110 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||| || ||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
23750610 |
cataggctagtgacttgggaaattttatttcagaaaacatgcatttcaaatggttgagagacaagtctaaattgcgcaggttcaaaagttgaccgaaact |
23750709 |
T |
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| Q |
111 |
atcaggaaattccccttgcaatttattttgactaagatagagggtttgcaaatttgaaagttgaccaatattttgtgggattgtaccattcagagagttt |
210 |
Q |
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||| ||||||| |||||| || |||||||||| ||| || ||||| ||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| |
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| T |
23750710 |
atcgggaaatttcccttgaaaattattttgacaaaggtaaagggtgtgcaattttgaaagtcgaccaatattttgtgggattgtgccattcagaaagttt |
23750809 |
T |
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| Q |
211 |
tctgacacatcaaggttttc |
230 |
Q |
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|||||||||||||||||||| |
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| T |
23750810 |
tctgacacatcaaggttttc |
23750829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 23851311 - 23851525
Alignment:
| Q |
11 |
cataggctagtgaattgggaaattttatttcagaaaatatgccttccaaattgttgaaagacaactctaaattgcgcaggttcaaaagttgaccaaaact |
110 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||| ||||||| ||||||||| ||||| |
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| T |
23851311 |
catagactagtgacctgggaaattttatttcagaaaacgtgccttccaaattgtttagagacaagtctaaattgcgaaggttcagaagttgaccgaaact |
23851410 |
T |
|
| Q |
111 |
atcaggaaattccccttgcaatttattttgactaagatagagggtttgcaaatttgaaagttgaccaatattttgtgggattgtaccattcagagagttt |
210 |
Q |
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|| |||||||| ||||||||| || |||| || || ||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
23851411 |
atgaggaaatttcccttgcaaattgtttttacaaatataaagggtatgtaaatttgaaagttgaccaacattttgtgggattgtaccattcagaaagttc |
23851510 |
T |
|
| Q |
211 |
tctgacacatcaagg |
225 |
Q |
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||||| ||||||||| |
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| T |
23851511 |
tctgagacatcaagg |
23851525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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