View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_49 (Length: 247)
Name: NF3018_high_49
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_49 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 51771806 - 51771560
Alignment:
| Q |
1 |
gaaaagactagcactagcactaggtgaagagagaatggtttgagtttgagctattagaggaagcttagcttgcttggtttgatcagtccatttgtattct |
100 |
Q |
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| T |
51771806 |
gaaaagactagcactagcactaggtgaagagagaatggtttgagtttgagctattagaggaagcttagcttgcttggtttgatcagtccatttgtattct |
51771707 |
T |
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| Q |
101 |
aagtatgtagtatttaaagggattaaaagtaggatgtgaatcttgatatacatactattgtgatatgactggaccgtgatgttggttgatgtaataaaga |
200 |
Q |
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| T |
51771706 |
aagtatgtagtatttaaagggattaaaagtaggatgtgaatcttgatatacatactattgtgatatgactggaccgtgatgttggttgatgtaataaaga |
51771607 |
T |
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| Q |
201 |
ccctacccacttggcaactgaattgaagggattttattcaaaataat |
247 |
Q |
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| T |
51771606 |
ccctacccacttggcaactgaattgaagggattttattcaaaataat |
51771560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 51807354 - 51807187
Alignment:
| Q |
44 |
gtttgagctattagaggaagcttagcttgcttggtttgatcagtccatttgtattctaagtatgtagtatttaaagggattaaaagtaggatgtgaatct |
143 |
Q |
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| T |
51807354 |
gtttgagctattagaggaagcttagcttgcttggtttgatcagtccctatgtattctaaggatgtagtatttaaagggattaaaagtaggaagtgaatct |
51807255 |
T |
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| Q |
144 |
tgatatacatactattgtgatatgactggaccgtgatgttggttgatgtaataaagaccctacccacttggcaa |
217 |
Q |
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| T |
51807254 |
---tagcc---cttttgtgggatgactcaaccatgatcttggttgatgtaataaagacactacccacatggcaa |
51807187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 51803460 - 51803358
Alignment:
| Q |
44 |
gtttgagctattagaggaagct---ta-gcttgcttggtttgatcagtccatttgtattctaagtatgtagtatttaaagggattaaaagtaggatgtga |
139 |
Q |
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|||||||||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| || |||| |
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| T |
51803460 |
gtttgagctattagaggaagctagctatgcttgtttggtttgatcagtccctttgtattctaagtatgtagtatttaaaggaatgaaaagtaagaagtga |
51803361 |
T |
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| Q |
140 |
atc |
142 |
Q |
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||| |
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| T |
51803360 |
atc |
51803358 |
T |
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