View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_52 (Length: 244)
Name: NF3018_high_52
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37577558 - 37577332
Alignment:
| Q |
1 |
ttatataaaaatcacgtcatttttgtgctgccacatgtcatttttagagagccacatgtgaatattgattaaaatctgctgtatcttctttatttggccc |
100 |
Q |
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| T |
37577558 |
ttatataaaaatcacgtcatttttgtgctgccacatgtcattttcagagagccacatgtgaatattgattaaaatctgctgtatcttctttatttggccc |
37577459 |
T |
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| Q |
101 |
ttgctagagtatcaatacattcatgctctttcgttgagatggaacatcaaaaacattttgattgaccagttaaagtgtgaatatctctgagattgtatag |
200 |
Q |
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| T |
37577458 |
ttgctagagtatcaatacattcatgctctttcgttgagatggaacatcaaaaacattttgattgaccagttaaagtgtgaatatctctgagattgtatag |
37577359 |
T |
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| Q |
201 |
ttaacacagatgttaagacccaaattt |
227 |
Q |
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| T |
37577358 |
ttaacacagatgttaagacccaaattt |
37577332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 37583519 - 37583391
Alignment:
| Q |
32 |
cacatgtcattttt--agagagccacatgtgaatattgattaaaatctgctgtatcttctttatttggcccttgct----agagtatcaatacattcatg |
125 |
Q |
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| T |
37583519 |
cacatgtcattttttaagagagccacgtgtgaatat--attaaaat--gctgtatctt--ttatttggaccttgcttgctagagtatcaagacattcatg |
37583426 |
T |
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| Q |
126 |
ctctttcgttgagatggaacatcaaaaacattttg |
160 |
Q |
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| T |
37583425 |
ttctttcgttaagatggaacatcaaatacattttg |
37583391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 37590217 - 37590128
Alignment:
| Q |
133 |
gttgagatggaacatcaaaaacattttgattgaccagttaaagtgtgaatatctctgagattgtatagttaacacagatgttaagacccaa |
223 |
Q |
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| T |
37590217 |
gttgagatggaacagtaaattcattttgattgaccagttaaagtgtaaatatctatggga-tgtacagttaccatagatgttaagacccaa |
37590128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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