View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_54 (Length: 240)
Name: NF3018_high_54
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_54 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 50218787 - 50218941
Alignment:
| Q |
83 |
agttcagaatttggagttctttatcttgttgataatattactccggaggccaagtatgccaaagttgacaaccattcagcagattggctgttgattgttc |
182 |
Q |
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| T |
50218787 |
agttcagaatttggagttctttatcttgttgataatattactccggaggccaagtatgccaaagttgacaaccattcagcagattggctgttgattgttc |
50218886 |
T |
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| Q |
183 |
taactgtgtatataaactactaaaatcaggcacgtgtcaaattcatgtcattctt |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50218887 |
taactgtgtatataaactactaaaatcaggcacgtgtcaaattcatgtcattctt |
50218941 |
T |
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