View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_high_7 (Length: 535)
Name: NF3018_high_7
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 14880899 - 14881404
Alignment:
| Q |
18 |
atatatgatcattacctggagctatgtaaccataagatcctgcgaaacaagaagtagactcggtattagaatcaagattctcaacgattgctttcgccaa |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14880899 |
atatatgatcattacctggagcaatgtaaccataagatcctgcgaaacaagaagtagactcggtattagaatcaagattctcaacgattgctttcgccaa |
14880998 |
T |
|
| Q |
118 |
tccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttgatgtccctatgaatgatccttggcacacaatcatgatgaagg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
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| T |
14880999 |
tccaaaatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttgatatcccggtgaatgatctttggcacacaatcatgatgaagg |
14881098 |
T |
|
| Q |
218 |
tactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaaggcttctccttaacttgagagcatttccatgtaaccaatcccaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14881099 |
tactccattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaaggcttctccttaacttgagagcatttccatgtaaccaatcccaaa |
14881198 |
T |
|
| Q |
318 |
cacttccattctccatgaactcatatatcaacagattgcaaccatttcctttgtgtctattgctacaacaaccaaccagtttcaccaaatgtctatgctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14881199 |
cacttccattctccatgaactcatatatcaacagattgcaaccatttcctttgtgtctattgctacaacaaccaaccagtttcaccaaatgtctatgctt |
14881298 |
T |
|
| Q |
418 |
aatcctccctaaagtcttcacttctcttataaagcttttatgcaacagatattcgtctttcaatgaaatcttcttgacagcaacagtctcaccggtaggc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14881299 |
aatcctccctaaagtcttcacttctcttataaagcttttatgcaacagatattcgtctttcaatgaaatcttcttgacagcaacagtctcaccggtaggc |
14881398 |
T |
|
| Q |
518 |
cattca |
523 |
Q |
| |
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||||| |
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| T |
14881399 |
aattca |
14881404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 274
Target Start/End: Complemental strand, 39006914 - 39006663
Alignment:
| Q |
23 |
tgatcattacctggagctatgtaaccataagatcctgcgaaacaagaagtagactcggtattagaatcaagattctcaacgattgctttcgccaatccaa |
122 |
Q |
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|||||| |||||||||| ||||| |||||||| ||||| ||||||||| | ||||| ||||| || ||| | | |||| || |||||| |||| ||||| |
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| T |
39006914 |
tgatcaatacctggagccatgtagccataagaccctgcaaaacaagaatttgactcagtatttgagtcataactttcaatgagtgcttttgccagtccaa |
39006815 |
T |
|
| Q |
123 |
aatctcccaagtgtgcatccatattggaatctaacaatatattgctggatttgatgtccctatgaatgatccttggcacacaatcatgatgaaggtactc |
222 |
Q |
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|||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| || ||||||||| |||| ||||||| ||||| |||||||| |
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| T |
39006814 |
aatctcccaagtgtgcctccattttggaatctagcaatatgttgctggatttgatgtctctgtgaatgatctttggtgcacaatcgtgatgtaggtactc |
39006715 |
T |
|
| Q |
223 |
cattccttgagctaaccccaaagcaattttgaaccgtgtgtcccaatcaagg |
274 |
Q |
| |
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|| |||||||||||| |||| |||||||||||| | ||| |||||||||||| |
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|
| T |
39006714 |
cactccttgagctaaacccacagcaattttgaatcttgtctcccaatcaagg |
39006663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 507
Target Start/End: Complemental strand, 39006609 - 39006421
Alignment:
| Q |
319 |
acttccattctccatgaactcatatatcaacagattgcaaccatttcctttgtgtctattgctacaacaaccaaccagtttcaccaaatgtctatgctta |
418 |
Q |
| |
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|||||||||||||||| ||||||| ||||| | ||| ||| |||||||| |||| ||||||| | || | || |||||||||||||||||||| |
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| T |
39006609 |
acttccattctccatgtactcatagatcaataaattcgaacttgctcctttgtttctactgctacagaatcctattagcttcaccaaatgtctatgcttt |
39006510 |
T |
|
| Q |
419 |
atcctccctaaagtcttcacttctcttataaagcttttatgcaacagatattcgtctttcaatgaaatcttcttgacagcaacagtctc |
507 |
Q |
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|| ||||| | || || |||||||||| || ||||| | |||||| | || ||||| |||||||||||||||||||||| ||||| |
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| T |
39006509 |
attctccccagtgtattaacttctcttaagaaacttttgtttaacagaaagtcatcttttgatgaaatcttcttgacagcaactgtctc |
39006421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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