View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_13 (Length: 444)
Name: NF3018_low_13
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 24181968 - 24181677
Alignment:
| Q |
18 |
gaagcatcatcattaccattaccaacattgttcttatcatcattttgagtagcaatttgagtagcaattccaattccaacatcagattctgatttcttcc |
117 |
Q |
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| T |
24181968 |
gaagcatcatcattaccattaccaacattgttcttatcatcattttgagtagcaatttgagtagcaattccaattccaacatcagattctgatttcttcc |
24181869 |
T |
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| Q |
118 |
tcaagctattattcttgttgttatgcatccaaactttgaaaactcctctagaaacaccaatctcattgcagaatttctgaaccaaaccatcatcactctt |
217 |
Q |
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| T |
24181868 |
tcaagctattattcttgttgttatgcatccaaactttgaaaactcctctagaaacaccaatctcattgcagaatttctgaaccaaaccatcatcactctt |
24181769 |
T |
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| Q |
218 |
ttgcattttccaacccaatttctcagaaaaaccatgcatcttctctttctgttccttgctgaattttgtcctgtacctctttttcccactac |
309 |
Q |
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| T |
24181768 |
ttgcattttccaacccaatttctcagaaaaaccatgcatcttctctttctgctccttgctgaattttgtcctgtacctctttttcccactac |
24181677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 404
Target Start/End: Complemental strand, 24181646 - 24181588
Alignment:
| Q |
346 |
ggctttcaagcttaacaacagatgaagcaaaattgagatttctttgaagatggttttga |
404 |
Q |
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| T |
24181646 |
ggctctcaagcttaacaacagatgaagcaaaattgagatttctttgaagatggttttga |
24181588 |
T |
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