View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_16 (Length: 405)
Name: NF3018_low_16
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 11158318 - 11157941
Alignment:
| Q |
7 |
tagataatactctagaatacttctcattaaatagagatagaaaatatctcatgtttctataagtttgtgtttccaaatggagtaaatacgactttggcgg |
106 |
Q |
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| T |
11158318 |
tagaaaatactctagaatacttctcattaaatagagatagaaaatatctcatgtttctataagtttgtgtttccaaatggagaaaatacgactttggcgg |
11158219 |
T |
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| Q |
107 |
cgattgttagtgacatcaggttggttcagagggaaagagagaatggaggcttgaaaaagaaaggaatatcttttgcaaggaggtgcgggtagcaaacctt |
206 |
Q |
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| T |
11158218 |
cgattgtgagtgacatcaggttggttcagaggga--gagagaatggtggcttgaaaaagaaaggaatatcttttgcaagggggtgcgggtagcaaaccat |
11158121 |
T |
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| Q |
207 |
taaaacttgtatatgcatggatattaaaaagcccaaaactaaattatgtattttaaaaagcattttaatctcataaactcatttttaatacttttttaaa |
306 |
Q |
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| T |
11158120 |
taaaacttgtatatgcatggatattaaaaagcccaaaactaaattatgtattttaaaaagcattttaatctcataaactcatttttaatacttttttaaa |
11158021 |
T |
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| Q |
307 |
tcagtcaaataataacaataatacttctttaaattagcatatcatcatacccaaaaatattcataatccaccctaaatac |
386 |
Q |
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| T |
11158020 |
tcagtcaaataataacaataatacttctttaaattagcatatcatcatacccaaaaatattcataatccaacctaaatac |
11157941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 11165391 - 11165323
Alignment:
| Q |
39 |
agagatagaaaatatctcatgtttctataagtttgtgtttccaaatggagtaaatacgactttggcggc |
107 |
Q |
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| T |
11165391 |
agagatagaaaatatatcaggtttcaatagggttgtgtttccaagtggagaaaatacgactttggcggc |
11165323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 385
Target Start/End: Complemental strand, 11165123 - 11165034
Alignment:
| Q |
293 |
aatacttttttaaatcagtcaaataataacaataatacttctttaaattagcatatcatcatacccaaaaatattcataatccaccctaaata |
385 |
Q |
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||||||| | |||||| |||||| ||| ||||||||||||||||||||||| ||||| | || ||| ||| ||||||||||||||||||| |
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| T |
11165123 |
aatacttctgtaaatcggtcaaacaatgacaataatacttctttaaattagaatatcttacta---aaagatactcataatccaccctaaata |
11165034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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