View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_17 (Length: 402)
Name: NF3018_low_17
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 40659725 - 40660105
Alignment:
| Q |
18 |
caatacatgcatctgacatggtcccatatattcatgagattatgagaagataataataactgacatgacacctataaaaggttttcaaaaaactcacgac |
117 |
Q |
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| T |
40659725 |
caatacatgcatctgacatggtcccatatattcatgagattatgagaagataataataactgacatgacacctataaaaggttttcaaaaaactcacgac |
40659824 |
T |
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| Q |
118 |
acaagctttccacgtctttgctgtcgagacaagagacaacgtactaagataagaagaaaataatggctgactactagaaattgtccttttcccatcataa |
217 |
Q |
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| T |
40659825 |
acaagctctccacgtctttgctgtcgagacaagagacaacgtactcagataagaagaaaataatggctgactactagaatttgtccttttcccatcataa |
40659924 |
T |
|
| Q |
218 |
atttttctattatagcattttcatttccctgtgaaattgtgactgaatagaatatggcatccttgttattgagaaggtctaagacc---ttagttcctaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40659925 |
atttttctattatagcattttcatttccctgtgaaattttgactgaatagaatatggcatccttgttattgagaaggtctaagaccttattagttcctaa |
40660024 |
T |
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| Q |
315 |
tcaccagcaccttcaaagtaagctagctagcttgttgctaggatcaggatcaacattcatcaaccaccactcttcttctca |
395 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40660025 |
tcaccagcaccttcaaagtaagctagctagcttgttactaggatcaggatcaacattcatcaaccgccactcttcttctca |
40660105 |
T |
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