View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_19 (Length: 391)

Name: NF3018_low_19
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_19
NF3018_low_19
[»] chr8 (16 HSPs)
chr8 (1-383)||(43271031-43271410)
chr8 (241-377)||(17700080-17700216)
chr8 (241-377)||(20824899-20825035)
chr8 (241-356)||(37434363-37434478)
chr8 (241-377)||(42176959-42177095)
chr8 (241-355)||(13878891-13879005)
chr8 (241-377)||(25090987-25091122)
chr8 (253-347)||(41664784-41664878)
chr8 (254-347)||(32267184-32267277)
chr8 (251-347)||(7925016-7925112)
chr8 (253-347)||(8300433-8300527)
chr8 (253-347)||(9923231-9923325)
chr8 (262-347)||(172464-172549)
chr8 (276-377)||(8902427-8902528)
chr8 (241-310)||(10530332-10530401)
chr8 (269-310)||(24794413-24794454)
[»] chr2 (10 HSPs)
chr2 (241-377)||(14440344-14440480)
chr2 (251-377)||(33515621-33515747)
chr2 (241-377)||(12646121-12646257)
chr2 (269-348)||(28253349-28253428)
chr2 (267-348)||(36804748-36804829)
chr2 (269-348)||(28399982-28400061)
chr2 (269-355)||(35488459-35488545)
chr2 (274-310)||(12565214-12565250)
chr2 (324-376)||(13550718-13550770)
chr2 (324-376)||(13551171-13551223)
[»] chr6 (14 HSPs)
chr6 (241-377)||(17605738-17605874)
chr6 (241-377)||(10576654-10576790)
chr6 (241-377)||(21629526-21629662)
chr6 (241-377)||(17577120-17577258)
chr6 (260-365)||(20882456-20882561)
chr6 (244-348)||(13938347-13938451)
chr6 (253-347)||(2554236-2554330)
chr6 (253-347)||(24766830-24766924)
chr6 (241-347)||(15956396-15956502)
chr6 (269-355)||(21549470-21549556)
chr6 (303-364)||(502998-503059)
chr6 (269-310)||(14372423-14372464)
chr6 (325-369)||(26205949-26205993)
chr6 (282-338)||(33753616-33753672)
[»] chr5 (16 HSPs)
chr5 (241-377)||(10780801-10780937)
chr5 (241-377)||(8299586-8299722)
chr5 (241-377)||(25856843-25856979)
chr5 (241-355)||(27796106-27796220)
chr5 (242-357)||(27165370-27165485)
chr5 (244-377)||(33170258-33170391)
chr5 (262-377)||(42928731-42928846)
chr5 (253-347)||(23239013-23239107)
chr5 (253-347)||(30731730-30731824)
chr5 (262-347)||(27116598-27116683)
chr5 (251-347)||(42514350-42514446)
chr5 (253-347)||(28535092-28535185)
chr5 (253-347)||(35983207-35983301)
chr5 (269-355)||(38358089-38358175)
chr5 (269-348)||(35122138-35122217)
chr5 (303-369)||(22094716-22094782)
[»] chr3 (15 HSPs)
chr3 (241-377)||(12341659-12341795)
chr3 (241-377)||(19891277-19891413)
chr3 (251-377)||(48569453-48569579)
chr3 (253-347)||(34332231-34332325)
chr3 (244-377)||(962570-962703)
chr3 (251-347)||(2364907-2365003)
chr3 (260-377)||(3141451-3141568)
chr3 (253-347)||(19919645-19919739)
chr3 (241-377)||(20531457-20531591)
chr3 (244-348)||(16179576-16179680)
chr3 (253-346)||(10322987-10323080)
chr3 (282-338)||(19652202-19652258)
chr3 (277-336)||(43284791-43284850)
chr3 (269-348)||(45684805-45684884)
chr3 (269-310)||(14863897-14863938)
[»] scaffold1350 (1 HSPs)
scaffold1350 (241-377)||(144-280)
[»] chr4 (19 HSPs)
chr4 (241-377)||(48312694-48312830)
chr4 (241-377)||(55725110-55725246)
chr4 (251-355)||(54482573-54482677)
chr4 (253-347)||(19755897-19755991)
chr4 (253-347)||(19783815-19783909)
chr4 (244-377)||(46146277-46146410)
chr4 (251-347)||(23642005-23642101)
chr4 (251-347)||(23647663-23647759)
chr4 (253-347)||(1827956-1828050)
chr4 (253-347)||(15740850-15740944)
chr4 (258-347)||(19733402-19733491)
chr4 (271-348)||(26694557-26694634)
chr4 (303-369)||(8935682-8935748)
chr4 (303-361)||(19115052-19115110)
chr4 (269-310)||(42952937-42952978)
chr4 (253-346)||(47419435-47419528)
chr4 (324-376)||(3129476-3129528)
chr4 (258-310)||(5789513-5789565)
chr4 (277-377)||(11586638-11586738)
[»] chr7 (11 HSPs)
chr7 (274-377)||(31423202-31423305)
chr7 (253-347)||(11276664-11276758)
chr7 (251-347)||(4937542-4937638)
chr7 (253-347)||(17721265-17721359)
chr7 (269-347)||(29968604-29968682)
chr7 (258-377)||(39931017-39931136)
chr7 (253-347)||(234854-234948)
chr7 (258-348)||(36364145-36364235)
chr7 (269-355)||(18768030-18768116)
chr7 (322-377)||(37255358-37255413)
chr7 (269-355)||(34457590-34457676)
[»] scaffold0472 (1 HSPs)
scaffold0472 (259-347)||(3882-3970)
[»] scaffold0034 (1 HSPs)
scaffold0034 (251-347)||(105257-105353)
[»] chr1 (4 HSPs)
chr1 (251-347)||(6051233-6051329)
chr1 (253-347)||(35541664-35541758)
chr1 (269-357)||(47622509-47622597)
chr1 (303-369)||(25504460-25504526)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 43271410 - 43271031
Alignment:
Q  1 tctcttttggaaatcttagcctaccgacaaataaatggcaacgtatgcatggcagttgnnnnnnnnttggtaattggtgtaccattacgataatgatgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||||| ||    
T  43271410 tctcttttggaaatcttagcctaccgacaaataaatggcaacgtatgcatggcagttgaaaaaaaattggtaattggcgtaccattacgataatgatcga 43271311  T
Q  101 gtacctagagtctaggatataaatttcgatttgatcgtgagtttgaaaatatatgtctatagcttaagtatcnnnnnnnnatttcaggtgatgtctacgg 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |    
T  43271310 gtacctagaatctaggatataaatttcgatttgatcgtgagtttgaaaatatatgtctatagcttaagtatcttttttt-atttcaggtgatgtctacag 43271212  T
Q  201 tttaatttatcgagtagtaaaattaaccgtatctttttatttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  43271211 tttaatttatcgagtagtaaaattaaccgtatctttttatttggttggagtt-tttgtgtttgaggagggagtatggagg-ttgggtgttaggaggttga 43271114  T
Q  301 gagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtagggtgatgatg 383  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  43271113 gagagtttaacatttccctactggggaaatggtgttggcggttgttagatgatatgggtggtttgtggtgtagggtgttgatg 43271031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 17700216 - 17700080
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |  |||||||||||||||||||    
T  17700216 ttggttgaagttctttgtgtttgaggagggagtatggagggttgggtgtgaggaggttgagagagtttaacattgctttgttggggaaatggtgttggcg 17700117  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  17700116 gctgttagttgataggggaggtttgtggagtagggtg 17700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 20825035 - 20824899
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||| |    
T  20825035 ttggttggagttctgtgtgcttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttggggaaatggtgttggag 20824936  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  20824935 gctgttagttgataggggaggtttgtggagtagggtg 20824899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 37434363 - 37434478
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  |||| ||||||||||||||    
T  37434363 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttgggaaaatggtgttggcg 37434462  T
Q  341 gttgttagatgatagg 356  Q
    | |||||| |||||||    
T  37434463 gctgttagttgatagg 37434478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 42176959 - 42177095
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||||| | |||||||||||||||||| || |  ||| |||||| ||||| ||    
T  42176959 ttggttggagttctttgtgtatgaggagggagtatggagggatgagtgttagggggttgagagagtttaacattcctttgttggagaaatgatgttgacg 42177058  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||||| |||||||| |||||||||| ||||||||    
T  42177059 gttgttagttgatagggatggtttgtggcgtagggtg 42177095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 13878891 - 13879005
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| | || |||||||||||||||||    
T  13878891 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcggagattgagcaagtttaacattgctttgctagggaaatggtgttggcg 13878990  T
Q  341 gttgttagatgatag 355  Q
    |||||||| ||||||    
T  13878991 gttgttagttgatag 13879005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 25091122 - 25090987
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||  |||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |  | ||||||||||||| |||    
T  25091122 ttggttggcattctttatgtttgaggagggagtatgg-ggtttgggtgttaggagattgagagagtttaacattgctttgttagggaaatggtgttagcg 25091024  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||||| |||||| |  || |||||| ||||||||    
T  25091023 gttgttagttgatagagaggggttgtggcgtagggtg 25090987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 41664784 - 41664878
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||| |  |||| |||||||||||||||||||||    
T  41664784 ctttgagtatgaggaaggagtatggagggttgggggttacgaggttgagagagtttaacattgctttgttgggtaaatggtgttggcggttgtta 41664878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 32267277 - 32267184
Alignment:
Q  254 tttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    |||| ||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||| ||| |  |||| |||||||||||||||||||||    
T  32267277 tttgagtttgcggaaggagtatggagggttgggggttacgagattgagagagtttaacatagctttgttgggtaaatggtgttggcggttgtta 32267184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 7925112 - 7925016
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  7925112 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 7925016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 8300527 - 8300433
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  8300527 ctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 8300433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 9923325 - 9923231
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||||||||| |||||||||||||||||| |||| ||| ||||||||||||||  | ||| |  |||  |||||||||||||||||||||    
T  9923325 ctttgagtttgaggaaggagtatggagggttgggggttacgaggttgagagagtttaatttagctttgttggataaatggtgttggcggttgtta 9923231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 172464 - 172549
Alignment:
Q  262 tgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    |||||| ||||||||||||||||||  ||| ||| ||||| ||||||||||||||| |  |||| |||||||| ||| ||||||||    
T  172464 tgaggaaggagtatggagggttggggtttaagaggttgagggagtttaacattgctttgttgggtaaatggtgctggaggttgtta 172549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 377
Target Start/End: Complemental strand, 8902528 - 8902427
Alignment:
Q  276 ggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtaggg 375  Q
    ||||| ||||| ||||||||  ||||||| |||||  | |||||  | || ||||||||||||||| |||||| |||||| | ||| ||||||| |||||    
T  8902528 ggaggtttgggggttaggaggatgagagaatttaatctggctctcttaggaaaatggtgttggcggatgttagttgatagagctggcttgtggtataggg 8902429  T
Q  376 tg 377  Q
    ||    
T  8902428 tg 8902427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 310
Target Start/End: Complemental strand, 10530401 - 10530332
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaa 310  Q
    ||||||||| |||||||||| | |  | ||||||||||||| || ||||||| || ||||||||||||||    
T  10530401 ttggttggaattctttgtgtataaaaaaggagtatggagggatgagtgttagtaggttgagagagtttaa 10530332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 24794454 - 24794413
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaa 310  Q
    ||||| |||||||||||| |||||||||||||| ||||||||    
T  24794454 ggagtctggagggttgggggttaggagattgagggagtttaa 24794413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 14440480 - 14440344
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||    
T  14440480 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctctgttggtgaaatggtgttggcg 14440381  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
     ||||||| ||||||||||||||||||||||||||||    
T  14440380 tttgttagttgataggggtggtttgtggtgtagggtg 14440344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 33515621 - 33515747
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagat 350  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| | || |||||||||||||| |||||||||| |    
T  33515621 ttctttgtgtttgaggagggagtatggggggctgggtgttaggagattaagagagtttaacattgctttgctagggaaatggtgttgacggttgttagtt 33515720  T
Q  351 gataggggtggtttgtggtgtagggtg 377  Q
    ||||| | ||| |||||| ||||||||    
T  33515721 gatagagatgggttgtggcgtagggtg 33515747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 12646257 - 12646121
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |  | || |||||||||||| |    
T  12646257 ttggttggaattctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaactttgttttgttaggaaaatggtgttggag 12646158  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    ||||||||  ||||| | ||| ||||||| |||||||    
T  12646157 gttgttagtagatagagatggattgtggtatagggtg 12646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 28253428 - 28253349
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  | || ||  | || |||||||||||||| |||||||    
T  28253428 ggagtatggagggttgggtgtaaggaggttgagagagtttaatttagccctgttaggaaaatggtgttggcgtttgttag 28253349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 36804829 - 36804748
Alignment:
Q  267 agggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    |||||| ||||| ||||||| |||||||  |||| ||||||||| |||||| |||| || |||||||||||| || ||||||    
T  36804829 agggagcatggatggttgggggttaggaagttgaaagagtttaatattgctttactaggaaaatggtgttggaggatgttag 36804748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 28399982 - 28400061
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    ||||| |||||| ||||| |||||| ||||||  |||||||| |||||| |||| || |||||||||||| || ||||||    
T  28399982 ggagtttggaggtttgggggttaggcgattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttag 28400061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 35488545 - 35488459
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgatag 355  Q
    |||| ||||||| ||||| |||||||  ||||  ||||||||  ||||| |||| || |||||||||||| ||||||||| ||||||    
T  35488545 ggagcatggaggtttgggggttaggaagttgaaggagtttaatgttgctttactaggtaaatggtgttggaggttgttagttgatag 35488459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 12565250 - 12565214
Alignment:
Q  274 atggagggttgggtgttaggagattgagagagtttaa 310  Q
    |||||||||||||||| | ||||||||||||||||||    
T  12565250 atggagggttgggtgtcaagagattgagagagtttaa 12565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 13550770 - 13550718
Alignment:
Q  324 gggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtagggt 376  Q
    ||||||||||||||| ||||||| | |||||| |||| |||||||| ||||||    
T  13550770 gggaaatggtgttggaggttgttggttgatagaggtgatttgtggtatagggt 13550718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 13551223 - 13551171
Alignment:
Q  324 gggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtagggt 376  Q
    ||||||||||||||| ||||||| | |||||| |||| |||||||| ||||||    
T  13551223 gggaaatggtgttggaggttgttggttgatagaggtgatttgtggtatagggt 13551171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 17605738 - 17605874
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||||||| |    
T  17605738 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttggggaaatggtgttggtg 17605837  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  17605838 gctgttagttgataggggaggtttgtggagtagggtg 17605874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 10576654 - 10576790
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |  |||||||||||||||||||    
T  10576654 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgttttgttggggaaatggtgttggcg 10576753  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| |||||| || ||||||||    
T  10576754 gctgttagttgataggggaggtttgcggagtagggtg 10576790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 21629526 - 21629662
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||| |||||||||    
T  21629526 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttggggaaattgtgttggcg 21629625  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||| | ||||||||| ||||||||    
T  21629626 gctgttagttgataggtgaggtttgtggagtagggtg 21629662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 17577120 - 17577258
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgtta--ggagattgagagagtttaacattgctctactggggaaatggtgttgg 338  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||||||  |||| ||| ||||||||||||||||| |  |||||||||||||||||    
T  17577120 ttggttggagttctgtgtgcttgaggagggagcatggagggttgggtgttataggaggttgcgagagtttaacattgctttgttggggaaatggtgttgg 17577219  T
Q  339 cggttgttagatgataggggtggtttgtggtgtagggtg 377  Q
     || |||||| ||||||||| ||||||||| ||||||||    
T  17577220 aggctgttagttgataggggaggtttgtggagtagggtg 17577258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 20882456 - 20882561
Alignment:
Q  260 tttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggt 359  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |  ||| ||||||||||||||||||||||| || ||||| |    
T  20882456 tttgaggagggagtatggagggatgggtgttaggaggttgagagagtttaacattgctttgttggagaaatggtgttggcggttgttagttgttagggat 20882555  T
Q  360 ggtttg 365  Q
    ||||||    
T  20882556 ggtttg 20882561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 13938451 - 13938347
Alignment:
Q  244 gttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggtt 343  Q
    |||||| |||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||| |  |  | |||||||||||| ||||    
T  13938451 gttggaattctttatgtttgaggaaggagtacggagggatgggtgttaggagattgagagagtttaacattgctttgttaagaaaatggtgttggaggtt 13938352  T
Q  344 gttag 348  Q
    |||||    
T  13938351 gttag 13938347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 2554330 - 2554236
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||| | |||| ||| ||||||||||||||||||||| |  |||| ||||||||||||| |||||||    
T  2554330 ctttgagtatgaggaaggagtatggagggttgagggttacgaggttgagagagtttaacattgctttgttgggtaaatggtgttggcagttgtta 2554236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 24766830 - 24766924
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| || |||||||||||  ||||| |  | || |||||||||||||||||||||    
T  24766830 ctttgagtctgaggaaggagtatggagggttgggggttacgaggttaagagagtttaatgttgctttgttaggtaaatggtgttggcggttgtta 24766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 15956396 - 15956502
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||  |||||||||||| |  | ||||||||||||| ||  ||||||| | |||||||| ||||| ||||| ||  |||| ||||||| ||||||    
T  15956396 ttggttgggattctttgtgtttaaaaaaggagtatggagggatgtttgttaggtggttgagagactttaatattgccctgttgggaaaatggttttggcg 15956495  T
Q  341 gttgtta 347  Q
    |||||||    
T  15956496 gttgtta 15956502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 21549556 - 21549470
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgatag 355  Q
    |||| ||||||| ||||| || ||||||||||  |||||||| |||||| |||| || |||||||||||| || |||||| ||||||    
T  21549556 ggagcatggaggtttgggggtgaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatag 21549470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 502998 - 503059
Alignment:
Q  303 gagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggttt 364  Q
    |||||||| |||||  |||| ||||||||||||||| || ||||||  ||||||||||||||    
T  502998 gagtttaatattgccttactagggaaatggtgttggaggatgttagtggataggggtggttt 503059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 14372423 - 14372464
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaa 310  Q
    |||||||||||||||||||||||| || || |||||||||||    
T  14372423 ggagtatggagggttgggtgttagaaggttaagagagtttaa 14372464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 26205993 - 26205949
Alignment:
Q  325 ggaaatggtgttggcggttgttagatgataggggtggtttgtggt 369  Q
    ||||||||||||||||||| || | |||||| |||||||||||||    
T  26205993 ggaaatggtgttggcggttattggttgatagaggtggtttgtggt 26205949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 33753616 - 33753672
Alignment:
Q  282 ttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttgg 338  Q
    ||||| || |||||||||| | |||||||||||||||| ||||  ||||||||||||    
T  33753616 ttgggggtaaggagattgaaaaagtttaacattgctcttctggctaaatggtgttgg 33753672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 10780937 - 10780801
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |  |||||||||||||||||||    
T  10780937 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgtgaggaggttgagagagtttaacattgctttgttggggaaatggtgttggcg 10780838  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  10780837 gctgttagttgataggggaggtttgtggagtagggtg 10780801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 8299586 - 8299722
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |  ||||||||||||||||| |    
T  8299586 ttggttggagttctgtgtgcttgaggagggagtatggagggttgggtgttaggaggttgcgagagtttaacattgctttgttggggaaatggtgttggag 8299685  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  8299686 gctgttagttgataggggaggtttgtggagtagggtg 8299722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 25856843 - 25856979
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |  ||||||||||||||| | |    
T  25856843 ttgggtggagttctgtgtgcttgaggagggagtatggagggttgggtgttaggaggttgcgagagtttaacattgctttgttggggaaatggtgttagag 25856942  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  25856943 gctgttagttgataggggaggtttgtggagtagggtg 25856979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 27796220 - 27796106
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| | || |||||||||||||||||    
T  27796220 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcggagattgagcaagtttaacattgctttgctagggaaatggtgttggcg 27796121  T
Q  341 gttgttagatgatag 355  Q
    |||||||| ||||||    
T  27796120 gttgttagttgatag 27796106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 27165370 - 27165485
Alignment:
Q  242 tggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcgg 341  Q
    |||||||| |||||| |||||||||| ||||||||||||| ||||||||||||| |||||| |||||||||||||  | |||||||||||||||||||||    
T  27165370 tggttggaattctttatgtttgaggaaggagtatggagggatgggtgttaggaggttgagaaagtttaacattgcattgctggggaaatggtgttggcgg 27165469  T
Q  342 ttgttagatgataggg 357  Q
    |||||||  |||||||    
T  27165470 ttgttagtagataggg 27165485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 33170391 - 33170258
Alignment:
Q  244 gttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggtt 343  Q
    |||||| |||||| |||||||||| ||||||||||||| ||||||||||||| ||||| |||||||| |||||| |  | || |||||||||||| ||||    
T  33170391 gttggaattctttatgtttgaggaaggagtatggagggatgggtgttaggagtttgagggagtttaatattgctttgttaggaaaatggtgttggaggtt 33170292  T
Q  344 gttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||  || || | ||| |||||| ||||||||    
T  33170291 gttagtagagagagatgggttgtggcgtagggtg 33170258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 262 - 377
Target Start/End: Complemental strand, 42928846 - 42928731
Alignment:
Q  262 tgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtgg 361  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||| |  |||| || ||||||||||| ||||||   |||||||  |     
T  42928846 tgaggaaggagtatggagggatgggtgttaggaggttgagagagtttaatattgctttgttgggaaagtggtgttggcgattgttaatagatagggaagc 42928747  T
Q  362 tttgtggtgtagggtg 377  Q
    ||| ||||||||||||    
T  42928746 tttatggtgtagggtg 42928731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 23239107 - 23239013
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||||| ||| |||||||||||||||||| |||| ||||||||| ||||| ||||||||| |  |||| ||||||||||| |||||||||    
T  23239107 ctttgagtttgcggaaggagtatggagggttgggggttacgagattgagggagttcaacattgctttgttgggtaaatggtgttgacggttgtta 23239013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 30731730 - 30731824
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  30731730 ctttgagtatgaggaaggagtatggagggttgggagttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 30731824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 347
Target Start/End: Original strand, 27116598 - 27116683
Alignment:
Q  262 tgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  27116598 tgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 27116683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 42514446 - 42514350
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||| ||||||| ||||||||    
T  42514446 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaattgtgttggaggttgtta 42514350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 28535092 - 28535185
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||||||||| | |||||||||||||||| |||| ||| ||||||||||||||  | ||| |  |||| |||||||||||||||||||||    
T  28535092 ctttgagtttgaggaagaagtatggagggttgggggttacgaggttgagagagtttaatttagct-tgttgggtaaatggtgttggcggttgtta 28535185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 35983207 - 35983301
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||||||||| |||||||||||||||||| |||| ||| |||| |||||||||  | ||| |  |||  |||||||||||||||||||||    
T  35983207 ctttgagtttgaggaaggagtatggagggttgggggttacgaggttgaaagagtttaatttagctttgttggataaatggtgttggcggttgtta 35983301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 38358175 - 38358089
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgatag 355  Q
    ||||| |||||| ||||| |||||||||||||  |||||||| |||||| |||| || |||||||||||| || |||||| ||||||    
T  38358175 ggagtttggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatag 38358089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 35122138 - 35122217
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    ||||| |||||||||||| |||||||| |||||  |||||||  ||||  |||| ||||||||||||||| || ||||||    
T  35122138 ggagtctggagggttgggggttaggaggttgaggaagtttaatgttgcattactagggaaatggtgttggaggatgttag 35122217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 22094716 - 22094782
Alignment:
Q  303 gagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggt 369  Q
    |||||||| |||||| |||| ||||| ||||||||| || ||||||  |||||||||||||| ||||    
T  22094716 gagtttaatattgctttactagggaagtggtgttggaggatgttagtggataggggtggtttttggt 22094782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 12341659 - 12341795
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |  |||||||||||||||||||    
T  12341659 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgtgaggaggttgagagagtttaacattgctttgttggggaaatggtgttggcg 12341758  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    | |||||| ||||||||| ||||||||| ||||||||    
T  12341759 gctgttagttgataggggaggtttgtggagtagggtg 12341795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 19891413 - 19891277
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||  |  || ||||||||||||||||    
T  19891413 ttggttggagttctttgtgtttgaggagggagtatggagggatgggtgttaggaggttgagagagtttaactttgcattgttgaggaaatggtgttggcg 19891314  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
     ||||||| |||||||| |||||||||| ||||||||    
T  19891313 attgttagttgatagggttggtttgtggcgtagggtg 19891277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 251 - 377
Target Start/End: Original strand, 48569453 - 48569579
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagat 350  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||| |    
T  48569453 ttctttgtgtttgaggagggagtatggagggctgggtgttaggagattgagagagtttaacattgctttgctagagaaatggtgttggcggttgttagtt 48569552  T
Q  351 gataggggtggtttgtggtgtagggtg 377  Q
    ||||| | ||| |||||| ||||||||    
T  48569553 gatagagatgggttgtggcgtagggtg 48569579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 34332231 - 34332325
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||| |  |||| |||||||||||||||||||||    
T  34332231 ctttgagtatgaggaaggagtatggagggttgggggttacgaggttgagagagtttaacattgctttgttgggtaaatggtgttggcggttgtta 34332325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 377
Target Start/End: Original strand, 962570 - 962703
Alignment:
Q  244 gttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggtt 343  Q
    |||||| |||||| |||||||||| |||||| |||||| ||||||||||||| ||||| |||||||| |||||| |  | || |||||||||||| ||||    
T  962570 gttggaattctttatgtttgaggaaggagtacggagggatgggtgttaggagtttgagggagtttaatattgctttgttaggaaaatggtgttggaggtt 962669  T
Q  344 gttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||  || || | ||| |||||| ||||||||    
T  962670 gttagtagagagagatgggttgtggcgtagggtg 962703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 2365003 - 2364907
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  2365003 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 2364907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 377
Target Start/End: Complemental strand, 3141568 - 3141451
Alignment:
Q  260 tttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggt 359  Q
    |||||||| ||||||| ||||| ||||||||||||||||||| |||||||||| |||| |  | || |||||||||||| |||||||||  || || | |    
T  3141568 tttgaggaaggagtatagagggatgggtgttaggagattgagggagtttaacactgctttgttaggaaaatggtgttggaggttgttagtagagagagat 3141469  T
Q  360 ggtttgtggtgtagggtg 377  Q
    || |||||| ||||||||    
T  3141468 gggttgtggcgtagggtg 3141451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 19919645 - 19919739
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||  |  |||| |||||||||||| ||||||||    
T  19919645 ctttgggtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgccttgttgggcaaatggtgttggaggttgtta 19919739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 20531457 - 20531591
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||| || | | ||| |||||| ||||||||| |||||||| |||||||| ||||||  ||||||||  ||  || |||||||||||||||||||    
T  20531457 ttggttggaattttgtttgtatgaggaaggagtatggtgggttgggggttaggaggttgaga--gtttaacaccgcattattggggaaatggtgttggcg 20531554  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
     ||||||  ||||||||  ||||||||| ||| ||||    
T  20531555 tttgttaattgatagggaaggtttgtggcgtaaggtg 20531591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 16179680 - 16179576
Alignment:
Q  244 gttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggtt 343  Q
    |||||| |||| | ||| |||||| |||||||| ||||||||| |||||||| ||||| ||||||||  | ||| |  ||||||||||||||||| ||||    
T  16179680 gttggaattctctatgtctgaggaaggagtatgaagggttgggagttaggaggttgagggagtttaatgtcgctttgttggggaaatggtgttggaggtt 16179581  T
Q  344 gttag 348  Q
    |||||    
T  16179580 gttag 16179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 10322987 - 10323080
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtt 346  Q
    ||||| || |||||| ||||| |||||||||||| |||| |||  |||| ||||||||||||||| |  |||| |||||||||||| |||||||    
T  10322987 ctttgagtatgaggaaggagtttggagggttgggggttaagaggctgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtt 10323080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 19652202 - 19652258
Alignment:
Q  282 ttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttgg 338  Q
    ||||| || |||||||||| |||||||||||||||||| ||||  ||||||||||||    
T  19652202 ttgggggtaaggagattgaaagagtttaacattgctcttctggctaaatggtgttgg 19652258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 43284791 - 43284850
Alignment:
Q  277 gagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgtt 336  Q
    |||| ||||| ||||||||||||||||||||||| |||||| |  | |||||||||||||    
T  43284791 gaggtttgggagttaggagattgagagagtttaatattgctattttagggaaatggtgtt 43284850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 45684884 - 45684805
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    ||||| |||||| ||||| |||||| ||||||  |||||||| |||||| |||| || |||||||||||| || ||||||    
T  45684884 ggagtttggaggtttgggggttaggcgattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttag 45684805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 14863897 - 14863938
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaa 310  Q
    ||||| |||||||||||| |||||||||||||| ||||||||    
T  14863897 ggagtctggagggttgggggttaggagattgagggagtttaa 14863938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 280 - 144
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  | ||||||||||||||| |    
T  280 ttggttggaattctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaacattgctttgttagggaaatggtgttggag 181  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    ||||||||  ||||| | ||| |||||| ||| ||||    
T  180 gttgttagtagatagagatggattgtggcgtaaggtg 144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 48312830 - 48312694
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| | || ||||||||||||| |||    
T  48312830 ttggttggcattctttgtgtttgaggagggagtatggggggttgggtgttcggagattgagagagtttaacattgctttgctagggaaatggtgttagcg 48312731  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||||| |||||| |  || |||||| ||||||||    
T  48312730 gttgttagttgatagagaggggttgtggcgtagggtg 48312694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 241 - 377
Target Start/End: Original strand, 55725110 - 55725246
Alignment:
Q  241 ttggttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcg 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  | ||||||||||||||| |    
T  55725110 ttggttggaattctttgtgtttgaggagggagtatggagggttgggtgttaggaggttgagagagtttaactttgctttgttagggaaatggtgttggag 55725209  T
Q  341 gttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    ||||||||  ||||| | ||| || |||| |||||||    
T  55725210 gttgttagtagatagagatggattatggtatagggtg 55725246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 355
Target Start/End: Original strand, 54482573 - 54482677
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagat 350  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| |    
T  54482573 ttctttgtgtttgaggagggagtatggggggctgggtgttcggagattgagcgagtttaacattgctttgctagggaaatggtgttggcggttgttagtt 54482672  T
Q  351 gatag 355  Q
    |||||    
T  54482673 gatag 54482677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 19755991 - 19755897
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||||||||  || ||||||||||||||||||||| |  |||  |||||||||||||||||||||    
T  19755991 ctttgagtatgaggaaggagtatggagggttgggtgttacaaggttgagagagtttaacattgctttgttggataaatggtgttggcggttgtta 19755897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 19783815 - 19783909
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||||||||  || ||||||||||||||||||||| |  |||  |||||||||||||||||||||    
T  19783815 ctttgagtatgaggaaggagtatggagggttgggtgttacaaggttgagagagtttaacattgctttgttggataaatggtgttggcggttgtta 19783909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 46146410 - 46146277
Alignment:
Q  244 gttggagttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggtt 343  Q
    |||||| |||||| |||||||||| |||||| |||||| ||||||||||||||||||| | ||||||||||||| |  | || |||||||||||  ||||    
T  46146410 gttggaattctttatgtttgaggaaggagtacggagggatgggtgttaggagattgagggggtttaacattgctttgttaggaaaatggtgttgaaggtt 46146311  T
Q  344 gttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||  || || | ||| |||||| ||||||||    
T  46146310 gttagtagagagagatgggttgtggcgtagggtg 46146277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 23642005 - 23642101
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  23642005 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 23642101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 23647663 - 23647759
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||  |||||||||||| ||||||||    
T  23647663 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttggataaatggtgttggaggttgtta 23647759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 1827956 - 1828050
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| ||||||||||||  |||| |||| ||| |||||||||||||||||| || |  |||  |||||||||||||||||||||    
T  1827956 ctttgagtatgaggaaggagtatggaggactgggggttacgaggttgagagagtttaacatttctttgttggataaatggtgttggcggttgtta 1828050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 15740944 - 15740850
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| || | ||| |||| |||||||||||||||| |  |||| ||||||||||  |||||||||    
T  15740944 ctttgagtatgaggaaggagtatggagggttgggggtaacgaggttgacagagtttaacattgctttgttgggtaaatggtgtttacggttgtta 15740850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 19733402 - 19733491
Alignment:
Q  258 tgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    |||||||||| |||||| | |||| ||||||||||||||||||| |||||||||| || | |  | || |||||||||||| ||||||||    
T  19733402 tgtttgaggaaggagtacgaagggatgggtgttaggagattgagggagtttaacactgttttgttaggaaaatggtgttggaggttgtta 19733491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 26694634 - 26694557
Alignment:
Q  271 agtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    |||||||||| ||||| || ||||||||||  |||||||| |||||| |||| || |||||||||||| || ||||||    
T  26694634 agtatggaggtttgggggtgaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttag 26694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 8935748 - 8935682
Alignment:
Q  303 gagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggt 369  Q
    |||||||| |||||  |||| ||||||||||||||| || ||||||  |||||||||||||| ||||    
T  8935748 gagtttaatattgccttactagggaaatggtgttggaggatgttagtggataggggtggtttttggt 8935682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 19115110 - 19115052
Alignment:
Q  303 gagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtgg 361  Q
    |||||||| |||||| || | ||||||||||||||| |||||||||  |||||||||||    
T  19115110 gagtttaatattgctttattagggaaatggtgttggaggttgttagtggataggggtgg 19115052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 42952937 - 42952978
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaa 310  Q
    ||||| |||||||||||| |||||||||||||| ||||||||    
T  42952937 ggagtctggagggttgggggttaggagattgagggagtttaa 42952978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 47419528 - 47419435
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtt 346  Q
    ||||| || |||||| ||||| |||||||||||| |||  |||  |||| ||||||||||||||| |  | || |||||||||||| |||||||    
T  47419528 ctttgagtatgaggaaggagtttggagggttgggggttcagaggctgagggagtttaacattgctttgttaggtaaatggtgttggaggttgtt 47419435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 3129476 - 3129528
Alignment:
Q  324 gggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtagggt 376  Q
    |||||||||||||||||| |||| |  ||||| ||||||||||||| ||||||    
T  3129476 gggaaatggtgttggcggatgttggtggatagaggtggtttgtggtatagggt 3129528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 5789513 - 5789565
Alignment:
Q  258 tgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaa 310  Q
    |||||| |||||||||||| ||||||||| | |||||| ||||| ||||||||    
T  5789513 tgtttgcggagggagtatgaagggttgggagataggaggttgagggagtttaa 5789565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 377
Target Start/End: Original strand, 11586638 - 11586738
Alignment:
Q  277 gagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtagggt 376  Q
    ||||| ||| ||||||||| || ||||||||||  | ||| ||  | || |||||||||||||||||||||| ||||| ||  || |||||||||| |||    
T  11586638 gagggatggatgttaggaggttaagagagtttattactgccctgttaggaaaatggtgttggcggttgttagttgataaggaagggttgtggtgtaaggt 11586737  T
Q  377 g 377  Q
    |    
T  11586738 g 11586738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 377
Target Start/End: Complemental strand, 31423305 - 31423202
Alignment:
Q  274 atggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtag 373  Q
    |||||||| ||||||||||||| |||||||||||||||| |||| |  ||||||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  31423305 atggagggatgggtgttaggaggttgagagagtttaacagtgctttgttggggaaatggtgttggcggttgttagttgatagggatggtttgtggcgtag 31423206  T
Q  374 ggtg 377  Q
    ||||    
T  31423205 ggtg 31423202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 11276664 - 11276758
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||||| ||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||||||||||||    
T  11276664 ctttgagtttgcggaaggagtatggagggttgggggttacgaggttgagggagtttaacattgctttggtgggtaaatggtgttggcggttgtta 11276758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 4937542 - 4937638
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  4937542 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 4937638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 17721359 - 17721265
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||||||||| |||||||||||||||||| |||| ||| ||||||||||||||  | ||| |  |||| |||||||||||||||||||||    
T  17721359 ctttgagtttgaggaaggagtatggagggttgggggttacgaggttgagagagtttaatttagctttgttgggtaaatggtgttggcggttgtta 17721265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 29968682 - 29968604
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    |||||||||||||||||| |||| ||||||||| |||||||| |||||| |  |||| |||||||||||||||||||||    
T  29968682 ggagtatggagggttgggggttacgagattgagggagtttaatattgctttgttgggtaaatggtgttggcggttgtta 29968604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 39931017 - 39931136
Alignment:
Q  258 tgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggg 357  Q
    |||||||| | |||||||||||||||||| |||||||| ||||| ||| |||| ||||||||  | || |||||||||||||| |||||||  ||  | |    
T  39931017 tgtttgagaaaggagtatggagggttgggggttaggaggttgagggagcttaatattgctctgttaggtaaatggtgttggcgtttgttagtggagggtg 39931116  T
Q  358 gtggtttgtggtgtagggtg 377  Q
     || ||||||||||||||||    
T  39931117 atgatttgtggtgtagggtg 39931136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 347
Target Start/End: Original strand, 234854 - 234948
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| ||| |||||||||| |||||| |  |||| |||||||||||| ||||||||    
T  234854 ctttgagtatgaggaaggagtatggagggttgggagttacgaggttgcgagagtttaatattgctttgttgggtaaatggtgttggtggttgtta 234948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 36364235 - 36364145
Alignment:
Q  258 tgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttag 348  Q
    |||||||| | ||||||||| |||||||| |||||||||||||| |||||||| |||||| |  || | |||||||||||||| |||||||    
T  36364235 tgtttgagaaaggagtatggtgggttgggggttaggagattgagggagtttaatattgctttgttgagtaaatggtgttggcgtttgttag 36364145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 18768116 - 18768030
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgatag 355  Q
    ||||| |||||| ||||| |||||||||||||  |||||||| |||||| |||| || |||||||||||| || |||||| ||||||    
T  18768116 ggagtttggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttggaggatgttagttgatag 18768030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 37255413 - 37255358
Alignment:
Q  322 tggggaaatggtgttggcggttgttagatgataggggtggtttgtggtgtagggtg 377  Q
    |||||||||| |||||||||||||||| |||||||| ||||||| || ||||||||    
T  37255413 tggggaaatgatgttggcggttgttagttgatagggatggtttggggcgtagggtg 37255358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 34457590 - 34457676
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgatag 355  Q
    |||| ||||||| ||||| |||||||||||||  |||||||| |||||| |||| || ||||||||||||  | |||||| ||||||    
T  34457590 ggagcatggaggtttgggggttaggagattgaaggagtttaatattgctttactaggtaaatggtgttgggtgatgttagttgatag 34457676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 3970 - 3882
Alignment:
Q  259 gtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| ||| |||||||||||||||||  |||| ||||||||| ||||||||||||||| |  |||| |||||||||||||||||||||    
T  3970 gtttgcggaaggagtatggagggttggaggttacgagattgagggagtttaacattgctttgttgggtaaatggtgttggcggttgtta 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 251 - 347
Target Start/End: Original strand, 105257 - 105353
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  105257 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 347
Target Start/End: Complemental strand, 6051329 - 6051233
Alignment:
Q  251 ttctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||||| || |||||| |||||||||||||||||| |||| ||| ||||  ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  6051329 ttctttgagtatgaggaaggagtatggagggttgggggttaagaggttgaaggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 6051233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 35541758 - 35541664
Alignment:
Q  253 ctttgtgtttgaggagggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgtta 347  Q
    ||||| || |||||| | |||||||||||||||| |||| ||| ||||| ||||||||||||||| |  |||| |||||||||||| ||||||||    
T  35541758 ctttgagtatgaggaagaagtatggagggttgggggttaagaggttgagggagtttaacattgctttgttgggtaaatggtgttggaggttgtta 35541664  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 47622509 - 47622597
Alignment:
Q  269 ggagtatggagggttgggtgttaggagattgagagagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggg 357  Q
    ||||||||||||||||| ||||||||| ||| |||||||||| || || ||  | || ||||| ||||| || ||||||| ||||||||    
T  47622509 ggagtatggagggttggctgttaggaggttgggagagtttaatatagccctgttaggaaaatgatgttgacgtttgttagttgataggg 47622597  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 25504460 - 25504526
Alignment:
Q  303 gagtttaacattgctctactggggaaatggtgttggcggttgttagatgataggggtggtttgtggt 369  Q
    |||||||| |||||  |||| ||||||||||||||| || ||||||  |||||||||||||| ||||    
T  25504460 gagtttaatattgccttactagggaaatggtgttggaggatgttagtggataggggtggtttttggt 25504526  T

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