View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_2 (Length: 622)
Name: NF3018_low_2
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 12 - 607
Target Start/End: Original strand, 6967712 - 6968307
Alignment:
| Q |
12 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
111 |
Q |
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| T |
6967712 |
tcatcaagttcatgcactcattgagaaattctcagagaaattagccaacttttgttacccttttgttgaggttagattctttgagaacattggtgattat |
6967811 |
T |
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| Q |
112 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
211 |
Q |
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| T |
6967812 |
atgagaaccaatgaagctttcttatacattgaaaactacttaacatctaaatcaaccaaccaagcaaagaaactccaaggtgaatatgtgagaaagtctt |
6967911 |
T |
|
| Q |
212 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
311 |
Q |
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| T |
6967912 |
tagttctaaagatggatgaaagacaaaagttttatgatgagtttgaaggggttaagtttgtttggagtctaatcaagattgtccccaacacaaattctgt |
6968011 |
T |
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| Q |
312 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaa |
411 |
Q |
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| T |
6968012 |
ttcattctatccagcttcagacaaaagattctaccttctcacatttcatcgtagtcatcgcgatttcgttgagaaatcttaccttaaccatgttttggaa |
6968111 |
T |
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| Q |
412 |
caaggtaaagaaattggtctaagtaagaggcagagaaagctttacacaaattgcacaggtaatggtgaatatgaaaggggaggtaagtggagtcatgtga |
511 |
Q |
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| T |
6968112 |
caaggtaaagaaattggtctaagtaagaggcagagaaagctttacacaaattgcacaggtaatggtgaatatgaaaggggaggtaagtggagtcatgtga |
6968211 |
T |
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| Q |
512 |
tatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttacattcagtaaggctaaag |
607 |
Q |
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| T |
6968212 |
tatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttacattcagtaaggctaaag |
6968307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 491 - 607
Target Start/End: Complemental strand, 1000780 - 1000666
Alignment:
| Q |
491 |
gaggtaagtggagtcatgtgatatttgaacatccgtcttcgtttgaaacaattgcaatgagtcctaaaaagaagaaagagattgttgatgatcttgttac |
590 |
Q |
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||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
1000780 |
gaggtaaatggagtcatgttatatttgaacatccatcttc-tttgaaacaattgcaatgaatcctaaaa-gaagaaatagattgttgatgatcttgttac |
1000683 |
T |
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| Q |
591 |
attcagtaaggctaaag |
607 |
Q |
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| T |
1000682 |
attcagtaaggctaaag |
1000666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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