View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_20 (Length: 389)
Name: NF3018_low_20
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 34 - 389
Target Start/End: Complemental strand, 43271807 - 43271453
Alignment:
| Q |
34 |
atgtaactgaatgaatacaaaatacgagagcatcattttggaatcattttcttacttgtacgtcaaattacaaacataatatgtgtcaagtctcgaacca |
133 |
Q |
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| T |
43271807 |
atgtaactgaatgaatacaaaatacgagagcttcattttggaatcattttcttacttgtacgtcaaattacaaacataatatgtgtcaagtctcgaacca |
43271708 |
T |
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| Q |
134 |
agaactacatggttgaagagtgaattttgcaaccaaatgatttcttaggaaactggcaaatgtggtagtaaaactgccaacaaggtttgaaaaaatacat |
233 |
Q |
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| T |
43271707 |
agaactacatggttgaagagtgaattttgcaaccaaatgatttcttaggaaactggcaaatgtggtagtaaaactgccaacaaggtttgaaaaaatacat |
43271608 |
T |
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| Q |
234 |
gataaaattaccaactaagggttggttaagcaaagagactaaactcacaatgtgtagatcaaagttccaatttttattatgaatgtctgcttttagtgat |
333 |
Q |
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| T |
43271607 |
gataaaattaccaac-aagggttggttaagcaaagagactaaactcacaatgtgtagatcaaagtttcaatttttattatgaatgtctgcttttagtgat |
43271509 |
T |
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| Q |
334 |
taatggcgtctcaaatatgattatctttaatggaacgaatctatggaaaaagaaaa |
389 |
Q |
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| T |
43271508 |
taatggtgtctcaaatatgattatctttaatggaatgaatctatggaaaaagaaaa |
43271453 |
T |
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