View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_21 (Length: 385)
Name: NF3018_low_21
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 8618429 - 8618059
Alignment:
| Q |
1 |
tcatcaattgttcacttgagattccttttgnnnnnnngacttgcaacatacaccgctgatgcagaaaagagtgtaccagttattgttactgattcttcat |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8618429 |
tcatcaattgttcacttgagattccttttgaaaaaaagacttgcaacatacaccgctgatgcagaaaagagtgtaccagttattgttactgattcttcat |
8618330 |
T |
|
| Q |
101 |
ttgttgatcaacgtgtttgcaatagagtacctaaaagtacacaggaagaaggtatatggtgtccagaagatgggtgtgttttcagcacaattttttgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8618329 |
ttgttgatcaacgtgtttgcaatagagtacctaaaagtacacaggaagaaggtatatggtgtccagaagatgggtgtgttttcagcacaattttttgtcc |
8618230 |
T |
|
| Q |
201 |
cttctgcagtaataccaacaatttgctcggagttcaaatcatggcaaccaattcttcaaatgctaagttacttgacaaggtgaattttacaactaatatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8618229 |
cttctgcagtaataccaacaatttgctcggagttcagatcatggcaaccaattcttcaaatgctaagttacttgacaaggtgaattttacaactaatatc |
8618130 |
T |
|
| Q |
301 |
agacaaccttatttcactagtgcttaaatctaaagtctgattgtac-ttttatatccttatctgctgtttc |
370 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
8618129 |
agacaaccttatttcactagtgcttaaatctaaagtctgattgtactttttttatccttatctgctgtttc |
8618059 |
T |
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