View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_22 (Length: 379)
Name: NF3018_low_22
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 7523918 - 7523572
Alignment:
| Q |
18 |
atattgaaaattgaaaatccgtaacaacaaccaaatttaatcatctaattgaaaaaagtgattatctaagtaagtgcttatcaaactacctcagcgaaat |
117 |
Q |
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| T |
7523918 |
atattgaaaattgaaaatccgcaacaacaaccaaatttaatcatctaattgaaaaaagtgattatctaagtaagtgcttatcaaactacctcagcgaaat |
7523819 |
T |
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| Q |
118 |
cagactgatgtccaggattgtgctgagattcaggtcgaatttcgatatcagcggattcatccactatctcctgcatcgtgttctgaatgaattcatcaaa |
217 |
Q |
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| T |
7523818 |
cagactgatgtccaggattgtgctgagattcgggtcgaatttcgatatcagcggattcatcaactatctcctgcatcgtgttctgaatgaattcatcaaa |
7523719 |
T |
|
| Q |
218 |
ggaatcaagctgttgacgtacaagtcctttttcttcaaaataagcagaaatcacagcccaggcatcttcctgggtaatctcttcttcatcgtcttcttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7523718 |
ggaatcaagctgttgacgtacaagtcctttttcttcaaaataagcagaaatcacagcccaggcatcttcctgggtaatctcttcttcatcgtcttcttct |
7523619 |
T |
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| Q |
318 |
tccatttgctgatcgaattcattttcttcttccaattccatcatcat |
364 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7523618 |
tccatttgctgatcgaattcattttcttcttccaaatccatcatcat |
7523572 |
T |
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