View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3018_low_23 (Length: 376)
Name: NF3018_low_23
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 2282830 - 2282478
Alignment:
| Q |
18 |
ataatcttcatctttgattgacagatttgcccccaacaatcttttttgaaatataaagagactttagtgtataatgcaatctctaaaaatacaaccaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2282830 |
ataatcttcatctttgattgacagatttgcccccaacaatcttttttgaaatataaagagactttagtgtataatgcaatctctaaaaatacaaccaaat |
2282731 |
T |
|
| Q |
118 |
ttagattaatcttgtgattgtttatcaaatttgtcaaccacccattttgaatttgattcataaagttaaaatatatgcaaacaagttgatatttatcaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2282730 |
ttagattaatcttgtgattgtttatcaaatttgtcaaccacccattttgaatttgattcataaagttaaaatatatgcaaacaagttgatatttatcaaa |
2282631 |
T |
|
| Q |
218 |
taaactgagaggatccattttctacaattgtagcttatatcgtgttgtacatcggtaccctnnnnnnntgtaatctaccacaaaaccaaacatagcttaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2282630 |
taaactgagaggatccattttctacaattgtagcttatatcgtgttgtacatcggtaccctaaaaaaatgtaatctaccacaaaaccaaacatagcttaa |
2282531 |
T |
|
| Q |
318 |
aacacttgttggtcacccaccataatgtgaactagtcgagatacctatgctac |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2282530 |
aacacttgttggtcacccaccataatgtgaactagtcgagatacccatgctac |
2282478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University