View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_24 (Length: 371)
Name: NF3018_low_24
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 21 - 358
Target Start/End: Complemental strand, 27004387 - 27004050
Alignment:
| Q |
21 |
gagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgcaaggtgcaaacatactatttatttctctcgtgtttctttctaaaacaagtt |
120 |
Q |
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| T |
27004387 |
gagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgcaaggtgcaaacatactatttatttctctcgtgtttctttctaaaacaagtt |
27004288 |
T |
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| Q |
121 |
gttgcaatttacgaaactttgttaaatctgagcgtctgttctccatattctattttagtgataaagtttgtcttaatagttccttagaaacttttggcta |
220 |
Q |
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| T |
27004287 |
gttgcaatttacgaaactttgttaaatctgagcgtctgttctccatattctattttagtgataaagtttgtcttaatagttgcttagaaacttttggcta |
27004188 |
T |
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| Q |
221 |
aagttctgcttgctatgaatgactatttcagatagcaaggctccttttgtccctcaattgtaataccattttctctatgttgatgatttctcatctgctt |
320 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27004187 |
aaattctgcttactatgaatgactatttcagatagcaaggctccttttgtccctcaattgtaataccattttctctatgttgatgatttctcatttgctt |
27004088 |
T |
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| Q |
321 |
cttatatttaaatgaaaatgtgaattatcctctctctg |
358 |
Q |
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| T |
27004087 |
cttatatttaaatgaaaatgtgaattatcctctctctg |
27004050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 21 - 361
Target Start/End: Complemental strand, 26989831 - 26989476
Alignment:
| Q |
21 |
gagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgcaaggtgcaaacatactatttatttctctcgtgtttctttctaaaacaagtt |
120 |
Q |
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|||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| |
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| T |
26989831 |
gagggttggcatggccttgtttacttattggatcgattgctcaaagtgcaaggtgcaaacatactatctatt--tctcgtgtttctttctaaaatgagtt |
26989734 |
T |
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| Q |
121 |
gttgcaatttacgaaactt--tgttaaatctgagcgtctgttctccatattct----------------attttagtgataaagtttgtcttaatagttc |
202 |
Q |
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| T |
26989733 |
gttgcaatttgcaaaactttatgtcaaatatgagaatctgtttttcatattctttttttgtttatgttcaatttggtgataaagtttgtcttaatagttg |
26989634 |
T |
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| Q |
203 |
cttagaaacttttggctaaagttctgcttgctatgaatgactatt-tcagatagcaaggctccttttgtccctcaattgtaataccattttctctatgtt |
301 |
Q |
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||| |||||||||||||||| ||| || | |||||| ||| || ||||||||||||| |||||||||| |||||| || |||| || |||| ||| |
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| T |
26989633 |
ctt-gaaacttttggctaaaattcccctctccatgaataacttttctcagatagcaaggttccttttgtcactcaatagt-atactgcttgctctgcgtt |
26989536 |
T |
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| Q |
302 |
gatgatttctcatctgcttcttatatttaaatgaaaatgtgaattatcctctctctgctc |
361 |
Q |
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| T |
26989535 |
gatgatttctcatttgcatcttatatttaaatgaaaatgtgaattatcctctctctgctc |
26989476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 26977809 - 26977877
Alignment:
| Q |
21 |
gagggttggcatggccttgtttacttgttgggtcgatcgcccaaagtgcaaggtgcaaacatactattt |
89 |
Q |
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|||| ||||||||||||| |||||||||||| | | | || || ||||||||||||||| ||||||||| |
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| T |
26977809 |
gaggattggcatggccttctttacttgttggattggttgctcagagtgcaaggtgcaaatatactattt |
26977877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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