View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3018_low_30 (Length: 346)
Name: NF3018_low_30
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_30 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0038 (3 HSPs) |
| | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 12661 - 12330
Alignment:
| Q |
1 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12661 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgga |
12562 |
T |
|
| Q |
101 |
atcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12561 |
atcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatg |
12462 |
T |
|
| Q |
201 |
aaatatcaaatatgaagtcagatagttataatacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12461 |
aaatatcaaatatgaagtcagatagttat-atacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaag |
12363 |
T |
|
| Q |
301 |
cgttttaaacttggaggaatccctgtaatttct |
333 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| |
|
|
| T |
12362 |
cattttaaacttggcggaatccctgtaatttct |
12330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 2170600 - 2170931
Alignment:
| Q |
1 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170600 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgga |
2170699 |
T |
|
| Q |
101 |
atcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170700 |
atcctagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatg |
2170799 |
T |
|
| Q |
201 |
aaatatcaaatatgaagtcagatagttataatacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2170800 |
aaatatcaaatatgaagtcagatagttat-atacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaag |
2170898 |
T |
|
| Q |
301 |
cgttttaaacttggaggaatccctgtaatttct |
333 |
Q |
| |
|
| |||||||||||| |||||||||||||||||| |
|
|
| T |
2170899 |
cattttaaacttggcggaatccctgtaatttct |
2170931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 2188017 - 2187687
Alignment:
| Q |
10 |
actagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
2188017 |
actagcaacgaagagagctatggaagggaacctgccacgaaaccaaaaagaaattgatggtccctcgctttggtgatcaaaccactctggaaccctagca |
2187918 |
T |
|
| Q |
110 |
cttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgttatttgtaaataactcacaagtttagcaagtaaaatcattatgaaatatcaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||| |||||||||||||||||| || |
|
|
| T |
2187917 |
cttcctgccaaactaaactcggtgcctccatcttcatgcaaatgctgttatttgtaaagaactaacaagtttagcaagaaaaatcattatgaaatattaa |
2187818 |
T |
|
| Q |
210 |
atatgaagtcagatagttat-------aatacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcg |
302 |
Q |
| |
|
| ||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| || |
|
|
| T |
2187817 |
aaatgaagtcaaatagatataaaacaaaatacaaaacctgactaagtagcatgcttctacatgaggaagtcagtgaattgcattgtaatgcagacaaacg |
2187718 |
T |
|
| Q |
303 |
ttttaaacttggaggaatccctgtaatttct |
333 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
2187717 |
ttttaaacttggcggaatccctgtaatttct |
2187687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 28142783 - 28142629
Alignment:
| Q |
5 |
gatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
104 |
Q |
| |
|
|||||| |||||| ||||| ||| |||||||||||| | |||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
28142783 |
gatttagtagcaaagaagatagccatggaagggaacttttcacgaaaccagaaagtaattgatggtcccttgctttggtgctcaaaccactctggaatcc |
28142684 |
T |
|
| Q |
105 |
tagcacttcctgccaaactaaactcggtgcctccatcttcatgcacatcctgtta |
159 |
Q |
| |
|
| | |||||||| ||| ||| || |||| |||| | ||||||| |||||||| |
|
|
| T |
28142683 |
tttctgttcctgcccaacgaaaatctgtgcttccagcctcatgcagttcctgtta |
28142629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 28246287 - 28246187
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||| | | ||||||| || | || |||||||||||||| |||||| ||| |||||||||| |||||||| |||| ||||||||| ||||||| |
|
|
| T |
28246287 |
acaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttc |
28246188 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
28246187 |
t |
28246187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 28246497 - 28246359
Alignment:
| Q |
21 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
120 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
28246497 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatccttgcaaatcctgaaaa |
28246398 |
T |
|
| Q |
121 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
159 |
Q |
| |
|
|| ||| | ||| |||||| | ||||||| |||||||| |
|
|
| T |
28246397 |
acaaaatttggttcctccagcctcatgcagttcctgtta |
28246359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 28525367 - 28525229
Alignment:
| Q |
21 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
120 |
Q |
| |
|
||||||| |||||||||| ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| ||| ||||| ||| |
|
|
| T |
28525367 |
agagagcaatggaagggaggttgttacgaaaccaaaaagaaattgtatgtcccatgttttggtgatcaaaccactctggaatccttgcaaatcctggcaa |
28525268 |
T |
|
| Q |
121 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
159 |
Q |
| |
|
|| |||| ||| |||||| | ||||||| |||||||| |
|
|
| T |
28525267 |
acaaaacctggttcctccagcctcatgcagttcctgtta |
28525229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 28239519 - 28239435
Alignment:
| Q |
21 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
105 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
28239519 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcct |
28239435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 28191337 - 28191232
Alignment:
| Q |
228 |
ataatacaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgta |
327 |
Q |
| |
|
|||| ||||||||||| | | ||||||| ||||||| |||||||||||||| ||||||| | |||||||||| | ||||| || | ||||||||| || |
|
|
| T |
28191337 |
ataaaacaaaacctgattcaatagcatgtttctacacgaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctcta |
28191238 |
T |
|
| Q |
328 |
atttct |
333 |
Q |
| |
|
|||||| |
|
|
| T |
28191237 |
atttct |
28191232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 26805614 - 26805556
Alignment:
| Q |
46 |
acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || |||||||| ||||| |||| |
|
|
| T |
26805614 |
acgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcc |
26805556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 28151992 - 28151892
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| | |||| || || | ||||||||||||| ||||||| |||| |||| || | ||||||| |
|
|
| T |
28151992 |
acaaaacctgattcagtagcatgtttctacatgaggaacttgatgatttacaattcaatgcagacaagcattttaaatttggcggaaaccatctaatttc |
28151893 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
28151892 |
t |
28151892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 28192463 - 28192527
Alignment:
| Q |
247 |
agtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaact |
311 |
Q |
| |
|
||||||||||| || || |||||||||||||| ||||| | |||||||||||| |||||||||| |
|
|
| T |
28192463 |
agtagcatgctcctgcaagaggaagtcaatgatttgcaatttaatgcagacaaatgttttaaact |
28192527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29829203 - 29829103
Alignment:
| Q |
1 |
cattgatttactagcaacgaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctgga |
100 |
Q |
| |
|
||||||||||| | |||||||||| | ||||| |||| | ||| ||||||||| ||||| |||||||| ||| | |||| || ||||||||||||||| |
|
|
| T |
29829203 |
cattgatttacaaacaacgaagagggttatggtggggagcttgttacgaaaccaaaaagatattgatggccccctattttggtgctcaaaccactctgga |
29829104 |
T |
|
| Q |
101 |
a |
101 |
Q |
| |
|
| |
|
|
| T |
29829103 |
a |
29829103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 27715568 - 27715626
Alignment:
| Q |
46 |
acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
27715568 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc |
27715626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 28152364 - 28152278
Alignment:
| Q |
19 |
gaagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
105 |
Q |
| |
|
||||||||| |||||||||| | ||| | |||||||||||||||||| | ||| | |||| || || | |||| ||||||||||||| |
|
|
| T |
28152364 |
gaagagagcaatggaagggagcttgttatgaaaccagaaagaaattgtttgtctcgtgctctggtgcttaaacgactctggaatcct |
28152278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 28526672 - 28526606
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaa |
299 |
Q |
| |
|
||||||||||| | | |||||||||||||||||| |||||||| || ||||| | ||||| |||||| |
|
|
| T |
28526672 |
acaaaacctgattcattagcatgcttctacatgacgaagtcaacgatttgcaatttaatggagacaa |
28526606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 29671548 - 29671593
Alignment:
| Q |
21 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattga |
66 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
29671548 |
agagagctatggcaggaaacttgttacgaaaccagaaagaaattga |
29671593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 26814446 - 26814346
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
|||| |||||| ||| |||||||||| ||| ||| ||||||||||| ||||| | ||||||||||| | ||| | |||| ||||||||| ||||||| |
|
|
| T |
26814446 |
acaatacctgactaattagcatgcttttacttgatgaagtcaatgatttgcaccgcaatgcagacaatgttattagatttggcggaatccctttaatttc |
26814347 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
26814346 |
t |
26814346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 28328529 - 28328429
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||| | | ||||||| || | || |||||||||||||| |||||| | ||||||||| ||||||| |||| ||||||||| ||||||| |
|
|
| T |
28328529 |
acaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttc |
28328430 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
28328429 |
t |
28328429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 28506165 - 28506065
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||| | | ||||||| || | || |||||||||||||| |||||| | ||||||||| ||||||| |||| ||||||||| ||||||| |
|
|
| T |
28506165 |
acaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttc |
28506066 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
28506065 |
t |
28506065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 16694090 - 16693992
Alignment:
| Q |
235 |
aaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttct |
333 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||| ||| || | || || ||||||||||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
16694090 |
aaaacctgattcagtagcatgcttctgcatgaggaagacaaagattcacattgcaatgcagacaaacgttttaaatttggaggaatccctctaatttct |
16693992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 46449 - 46349
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||| | | ||||||| || | || |||||||||||||| |||||| ||| |||||||||| |||||||| |||| ||||||||| ||||||| |
|
|
| T |
46449 |
acaaaacctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttc |
46350 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
46349 |
t |
46349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 46659 - 46521
Alignment:
| Q |
21 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcctagcacttcctgccaa |
120 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||||| ||| ||||| || |
|
|
| T |
46659 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatccttgcaaatcctgaaaa |
46560 |
T |
|
| Q |
121 |
actaaactcggtgcctccatcttcatgcacatcctgtta |
159 |
Q |
| |
|
|| ||| | ||| |||||| | ||||||| |||||||| |
|
|
| T |
46559 |
acaaaatttggttcctccagcctcatgcagttcctgtta |
46521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 39681 - 39597
Alignment:
| Q |
21 |
agagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
105 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||||| |||||||||| ||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
39681 |
agagagccatggaagggagcttgttacgaaaccaaaaagaaattgtatgtcccatgttttgatgatcaaaccactctggaatcct |
39597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 333
Target Start/End: Original strand, 55481 - 55581
Alignment:
| Q |
233 |
acaaaacctgagtaagtagcatgcttctacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||| | | ||||||| | | || |||||||||||||| |||||| ||| |||||||||| |||||| | |||| ||||||||| ||||||| |
|
|
| T |
55481 |
acaaaacctgattcaatagcatgtgtttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttc |
55580 |
T |
|
| Q |
333 |
t |
333 |
Q |
| |
|
| |
|
|
| T |
55581 |
t |
55581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 55270 - 55355
Alignment:
| Q |
20 |
aagagagctatggaagggaacctgtcacgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcct |
105 |
Q |
| |
|
|||||||| ||||||||| | ||| ||||||||| |||||||| | ||||| || |||| || |||||||||||||||||||| |
|
|
| T |
55270 |
aagagagccgtggaagggagcttgttacgaaaccaaaaagaaatcgtatgtcccatgttttggtgctcaaaccactctggaatcct |
55355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 16377 - 16319
Alignment:
| Q |
46 |
acgaaaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatcc |
104 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| || |||||||| ||||| |||| |
|
|
| T |
16377 |
acgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatcc |
16319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 18652591 - 18652647
Alignment:
| Q |
50 |
aaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatccta |
106 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| || || ||||| |||||||||||| |
|
|
| T |
18652591 |
aaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatccta |
18652647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 18676673 - 18676729
Alignment:
| Q |
50 |
aaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatccta |
106 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| || || ||||| |||||||||||| |
|
|
| T |
18676673 |
aaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatccta |
18676729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 18686716 - 18686772
Alignment:
| Q |
50 |
aaccagaaagaaattgatggtcccttgctttgttgatcaaaccactctggaatccta |
106 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| || || ||||| |||||||||||| |
|
|
| T |
18686716 |
aaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatccta |
18686772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 26138868 - 26138796
Alignment:
| Q |
260 |
tacatgaggaagtcaatgagttgcagtgtaatgcagacaagcgttttaaacttggaggaatccctgtaatttc |
332 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||| || ||||| | |||| ||||||||| ||||||| |
|
|
| T |
26138868 |
tacatgaggaagtcaatgacttgcattgtattgcagaaaacttttttagatttggtggaatccctttaatttc |
26138796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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