View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3018_low_31 (Length: 342)
Name: NF3018_low_31
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 111 - 332
Target Start/End: Original strand, 17110288 - 17110509
Alignment:
| Q |
111 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcccaagtgggtaataatataaatcaatacagttgg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17110288 |
gatcagtgggatttatgttgtaatctgaaatgcagtgtttaaatacaaatttgtaccctgtaaatcctaagtgggtaataatataaatcaatacagttgg |
17110387 |
T |
|
| Q |
211 |
agacgtacacacaattggccgagcttaattagttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
310 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110388 |
agacgtacacgcaattggccgagcttaattagttaccaaacgtcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctg |
17110487 |
T |
|
| Q |
311 |
ttctaacactatctgatctgtg |
332 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17110488 |
ttctaacactatctgatctgtg |
17110509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 17110155 - 17110266
Alignment:
| Q |
1 |
caattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggaccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17110155 |
caattactcaggtacctactatttacatgttttcttttggtatatctcatatcaagtggtgcagatttatattcaaatagtatttacttgaactggaccc |
17110254 |
T |
|
| Q |
101 |
actttaaaatga |
112 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17110255 |
actttaaaatga |
17110266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 17126147 - 17126221
Alignment:
| Q |
256 |
tgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaacactatctgatctgt |
331 |
Q |
| |
|
||||||||||||||||||||||| || |||| ||||||| ||||| |||| ||||||||||||||||||||||| |
|
|
| T |
17126147 |
tgtgttcattgtttgcgttttttga-atttttactcttttgaactagggttgatgttctaacactatctgatctgt |
17126221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 35052192 - 35052265
Alignment:
| Q |
243 |
ttaccaaacttcgtgtgttcattgtttgcgttttttcctatctttaatcttttggactagagttgctgttctaaca |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| || || |||||||||||||| |
|
|
| T |
35052192 |
ttaccaaacaacgtgtgttcattgtttgcg-tttttcgtatctttattcttttgaaccgga-ttgctgttctaaca |
35052265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University