View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_32 (Length: 324)

Name: NF3018_low_32
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_32
NF3018_low_32
[»] chr1 (14 HSPs)
chr1 (1-275)||(49273951-49274225)
chr1 (34-275)||(49255441-49255681)
chr1 (46-275)||(49268177-49268405)
chr1 (104-267)||(49273259-49273421)
chr1 (276-311)||(19528364-19528399)
chr1 (276-305)||(40257403-40257432)
chr1 (279-308)||(52116821-52116850)
chr1 (276-308)||(9165235-9165267)
chr1 (276-308)||(15581181-15581213)
chr1 (276-308)||(17745296-17745328)
chr1 (276-308)||(31794304-31794336)
chr1 (276-312)||(33700809-33700845)
chr1 (276-312)||(37310012-37310048)
chr1 (276-312)||(41508835-41508871)
[»] chr3 (19 HSPs)
chr3 (92-275)||(29356746-29356928)
chr3 (276-312)||(10499145-10499181)
chr3 (279-312)||(2667869-2667902)
chr3 (279-312)||(16991549-16991582)
chr3 (276-308)||(8051218-8051250)
chr3 (276-312)||(31520641-31520677)
chr3 (276-306)||(24459994-24460024)
chr3 (276-309)||(36720385-36720418)
chr3 (276-308)||(1360925-1360957)
chr3 (276-308)||(3054998-3055030)
chr3 (276-312)||(4222145-4222181)
chr3 (276-312)||(5499443-5499479)
chr3 (276-308)||(9832501-9832533)
chr3 (276-308)||(26871544-26871576)
chr3 (276-308)||(27923083-27923115)
chr3 (276-312)||(28928915-28928951)
chr3 (276-312)||(31789006-31789042)
chr3 (276-308)||(42799787-42799819)
chr3 (276-312)||(46518632-46518668)
[»] chr6 (8 HSPs)
chr6 (275-312)||(6776643-6776680)
chr6 (275-308)||(10338214-10338247)
chr6 (279-308)||(21418477-21418506)
chr6 (276-308)||(12188343-12188375)
chr6 (276-312)||(30127404-30127440)
chr6 (276-312)||(32613176-32613212)
chr6 (276-308)||(33549108-33549140)
chr6 (275-311)||(33931982-33932018)
[»] chr4 (10 HSPs)
chr4 (276-312)||(9241061-9241097)
chr4 (276-312)||(51250558-51250594)
chr4 (276-308)||(19238617-19238649)
chr4 (276-312)||(27965546-27965582)
chr4 (276-308)||(55427240-55427272)
chr4 (276-308)||(29195099-29195131)
chr4 (276-308)||(37109391-37109423)
chr4 (276-312)||(37443706-37443742)
chr4 (276-308)||(37720254-37720286)
chr4 (276-312)||(47044721-47044757)
[»] chr7 (15 HSPs)
chr7 (276-308)||(41487366-41487398)
chr7 (276-312)||(48771942-48771978)
chr7 (276-314)||(39499753-39499791)
chr7 (276-305)||(30579339-30579368)
chr7 (279-308)||(43590914-43590943)
chr7 (279-311)||(4161295-4161327)
chr7 (276-308)||(5273630-5273662)
chr7 (276-308)||(15905713-15905745)
chr7 (278-306)||(19553460-19553488)
chr7 (276-312)||(21854552-21854588)
chr7 (276-308)||(23301642-23301674)
chr7 (276-308)||(25021375-25021407)
chr7 (276-308)||(26459450-26459482)
chr7 (276-308)||(39631848-39631880)
chr7 (276-308)||(42836041-42836073)
[»] chr5 (6 HSPs)
chr5 (276-308)||(21589292-21589324)
chr5 (275-308)||(16436621-16436654)
chr5 (276-308)||(16457814-16457846)
chr5 (276-308)||(21549177-21549209)
chr5 (276-312)||(26598528-26598564)
chr5 (276-312)||(29075785-29075821)
[»] chr2 (8 HSPs)
chr2 (276-308)||(37480079-37480111)
chr2 (276-308)||(7799075-7799107)
chr2 (276-312)||(16381690-16381726)
chr2 (276-312)||(16918614-16918650)
chr2 (276-308)||(23052563-23052595)
chr2 (276-308)||(37756011-37756043)
chr2 (276-308)||(42327435-42327467)
chr2 (276-308)||(42602558-42602590)
[»] scaffold1367 (1 HSPs)
scaffold1367 (278-312)||(876-910)
[»] scaffold0299 (1 HSPs)
scaffold0299 (278-312)||(11534-11568)
[»] chr8 (15 HSPs)
chr8 (276-314)||(8485003-8485041)
chr8 (276-308)||(968366-968398)
chr8 (276-308)||(2203496-2203528)
chr8 (276-308)||(3624584-3624616)
chr8 (276-312)||(4830491-4830527)
chr8 (276-308)||(6436595-6436627)
chr8 (276-308)||(6530811-6530843)
chr8 (276-308)||(16852344-16852376)
chr8 (276-308)||(18540302-18540334)
chr8 (276-308)||(19703527-19703559)
chr8 (276-308)||(22268973-22269005)
chr8 (276-308)||(23874422-23874454)
chr8 (276-308)||(26688869-26688901)
chr8 (276-308)||(29431015-29431047)
chr8 (276-308)||(29858089-29858121)
[»] scaffold0955 (1 HSPs)
scaffold0955 (276-308)||(3467-3499)
[»] scaffold0417 (1 HSPs)
scaffold0417 (276-312)||(10223-10259)
[»] scaffold0258 (1 HSPs)
scaffold0258 (276-308)||(15363-15395)
[»] scaffold0172 (1 HSPs)
scaffold0172 (276-312)||(32805-32841)
[»] scaffold0118 (1 HSPs)
scaffold0118 (276-312)||(41669-41705)
[»] scaffold0070 (1 HSPs)
scaffold0070 (276-308)||(38942-38974)
[»] scaffold0032 (1 HSPs)
scaffold0032 (276-312)||(112286-112322)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 49274225 - 49273951
Alignment:
Q  1 tttttattttatacatatcctatggtgctaagcattgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49274225 tttttattttatacatatcctatggtgctaagcattgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagct 49274126  T
Q  101 gggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49274125 gggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttg 49274026  T
Q  201 ttataggttcctctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49274025 ttataggttcctctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 49273951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 34 - 275
Target Start/End: Original strand, 49255441 - 49255681
Alignment:
Q  34 attgtggctctacttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctcta 133  Q
    |||||||||| ||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||     
T  49255441 attgtggctcaacttggggaagttactgagtttacttggccaagaccctttgatttcacaagaagctggaaaatttgctatgtgcatgattcctgctctt 49255540  T
Q  134 tttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccctttgacttccat 233  Q
    |||||||||||||| |||||||||| |||| |||||||||| |||||||||||| |  ||||| |||||||| ||||||||||||||||| || ||||||    
T  49255541 tttgcttatgcaactcttcaggcactggtcagatactttcttatgcaaagtttggttcttcctcttgttataagttcctctgttacccttgga-ttccat 49255639  T
Q  234 gaagctttttcttggttgctagtttttaaatctggatcaggt 275  Q
    | ||| |||| ||||||  |||||||||||||||||| ||||    
T  49255640 gtagcattttgttggttattagtttttaaatctggattaggt 49255681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 275
Target Start/End: Original strand, 49268177 - 49268405
Alignment:
Q  46 cttggggaagctatcgagtttactcggccaagaccctttgatttcacaagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgca 145  Q
    |||||| | ||||| || ||||||||| ||||||||| ||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||    
T  49268177 cttgggaaggctattgattttactcggtcaagaccctctgatttcacaagaagctggaaaattttccatgtgcatgattcctgctctatttgcttatgca 49268276  T
Q  146 acacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgttataggttcctctgttaccctttgacttccatgaagctttttct 245  Q
    || |||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||| || |||||||| |||||||| |    
T  49268277 acgcttcaggcactggtcagatactttctgatgcaaagtttgatacttcctcttgttataagttccactgttaccctgtg-cttccatgtagctttttgt 49268375  T
Q  246 tggttgctagtttttaaatctggatcaggt 275  Q
    ||| || |||||||||||||||||| ||||    
T  49268376 tggctgttagtttttaaatctggattaggt 49268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 104 - 267
Target Start/End: Original strand, 49273259 - 49273421
Alignment:
Q  104 aaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatatttcctgttgtta 203  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||||||||||||  ||| |||  ||||||||||||||| ||||| ||| | ||||||    
T  49273259 aaatatgttatgggcatgattcctgctctattttcttatgcaacacttcaggcactagtcagattgtttctgatgcaaagtatgatacttcttcttgtta 49273358  T
Q  204 taggttcctctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctg 267  Q
    |||  |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  49273359 tagagtcctctattacccttt-acttccatgtagctttttcttggttgctagtttttaaatctg 49273421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 311
Target Start/End: Complemental strand, 19528399 - 19528364
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatct 311  Q
    ||||||||||||||||||||||||||||||||||||    
T  19528399 cacttgggttggcctggtggtattggcttgggatct 19528364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Original strand, 40257403 - 40257432
Alignment:
Q  276 cacttgggttggcctggtggtattggcttg 305  Q
    ||||||||||||||||||||||||||||||    
T  40257403 cacttgggttggcctggtggtattggcttg 40257432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Complemental strand, 52116850 - 52116821
Alignment:
Q  279 ttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||||||||||||    
T  52116850 ttgggttggcctggtggtattggcttggga 52116821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 9165267 - 9165235
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  9165267 cacttgggttggcctagtggtattggcttggga 9165235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 15581213 - 15581181
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  15581213 cacttgggttggcctggtggtgttggcttggga 15581181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 17745328 - 17745296
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  17745328 cacttgggttggcctagtggtattggcttggga 17745296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 31794336 - 31794304
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  31794336 cacttgggttggcctagtggtattggcttggga 31794304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 33700845 - 33700809
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  33700845 cacttgggttggcctagtggtattggcttggaatctg 33700809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 37310048 - 37310012
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||||||| |||| |||||||    
T  37310048 cacttgggttggcctggtggtattagcttcggatctg 37310012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 41508835 - 41508871
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  41508835 cacttgggttggcctggtggtactggtttgggatctg 41508871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 92 - 275
Target Start/End: Original strand, 29356746 - 29356928
Alignment:
Q  92 caagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgcaacacttcaggcacgggtccgatactttctgatgcaaagtttgatat 191  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | || | ||  ||||  |||||||||||||||||||||||||     
T  29356746 caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcttatgcaactcctcggccaatggtcatatactttctgatgcaaagtttgatag 29356845  T
Q  192 ttcctgttgttataggttcctctgttaccctttgacttccatgaagctttttcttggttgctagtttttaaatctggatcaggt 275  Q
    ||| | ||||||||  |||| ||||||| ||||| |||||||  || ||||| ||||||||||||||| |||||| ||| ||||    
T  29356846 ttcatcttgttataacttccactgttacactttg-cttccatatagttttttattggttgctagttttcaaatctagattaggt 29356928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 10499181 - 10499145
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||||||||||||||||||||    
T  10499181 cacttgggttggcctggtggtattggcttgggatctg 10499145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 2667869 - 2667902
Alignment:
Q  279 ttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||||||||||||||||||||||    
T  2667869 ttgggttggcctggtggtattggcttgggatctg 2667902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 16991549 - 16991582
Alignment:
Q  279 ttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||||||||||||||||||||||    
T  16991549 ttgggttggcctggtggtattggcttgggatctg 16991582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 8051218 - 8051250
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||||||||||||||||||||    
T  8051218 cacttgggttggcctggtggtattggcttggga 8051250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 31520677 - 31520641
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||| ||||||||||||||||    
T  31520677 cacttgggttggcctggtggcattggcttgggatctg 31520641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 306
Target Start/End: Original strand, 24459994 - 24460024
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgg 306  Q
    |||||||||||||||||||||||||||||||    
T  24459994 cacttgggttggcctggtggtattggcttgg 24460024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Original strand, 36720385 - 36720418
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggat 309  Q
    |||||||||||| |||||||||||||||||||||    
T  36720385 cacttgggttggtctggtggtattggcttgggat 36720418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 1360925 - 1360957
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||| |||||||||||||    
T  1360925 cacttgggttggcctggtgttattggcttggga 1360957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 3054998 - 3055030
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  3054998 cacttgggttggcctggtggtgttggcttggga 3055030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 4222145 - 4222181
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||| | |||||||||||||||||||||    
T  4222145 cacttgggttggcttagtggtattggcttgggatctg 4222181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 5499479 - 5499443
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  5499479 cacttgggttggcctggtggtattgacttgagatctg 5499443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 9832501 - 9832533
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||| ||||||||||||||||||    
T  9832501 cacttgggttggcccggtggtattggcttggga 9832533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 26871576 - 26871544
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  26871576 cacttgggttggcctggtggtgttggcttggga 26871544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 27923115 - 27923083
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||| |||||||||||||||||||||||||||    
T  27923115 cacttaggttggcctggtggtattggcttggga 27923083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 28928951 - 28928915
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  28928951 cacttggattggcctagtggtattggcttgggatctg 28928915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 31789042 - 31789006
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  31789042 cacttgggttggcctagtgttattggcttgggatctg 31789006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 42799819 - 42799787
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  42799819 cacttgggttggcctggtggtgttggcttggga 42799787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 46518632 - 46518668
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||| | |||||||||||||||||||||    
T  46518632 cacttgggttggcatagtggtattggcttgggatctg 46518668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 6776680 - 6776643
Alignment:
Q  275 tcacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6776680 tcacttgggttggcctggtggtattggcttgggatctg 6776643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 10338247 - 10338214
Alignment:
Q  275 tcacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||| |||||||||||||||||||    
T  10338247 tcacttgggttggcatggtggtattggcttggga 10338214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 21418477 - 21418506
Alignment:
Q  279 ttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||||||||||||    
T  21418477 ttgggttggcctggtggtattggcttggga 21418506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 12188375 - 12188343
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  12188375 cacttgggttggcctagtggtattggcttggga 12188343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 30127404 - 30127440
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  30127404 cacttgggttggtctggtggtattggcttggggtctg 30127440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 32613212 - 32613176
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  32613212 cacttgggttggcctggtggtattgacttggggtctg 32613176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 33549108 - 33549140
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||| ||||||||||||||||||||    
T  33549108 cacttgggttggtctggtggtattggcttggga 33549140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 33932018 - 33931982
Alignment:
Q  275 tcacttgggttggcctggtggtattggcttgggatct 311  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  33932018 tcacttgggttgacctggtggtattgacttgggatct 33931982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 9241097 - 9241061
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||||||||||||||||||||    
T  9241097 cacttgggttggcctggtggtattggcttgggatctg 9241061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 51250594 - 51250558
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||||||||||||||||||||    
T  51250594 cacttgggttggcctggtggtattggcttgggatctg 51250558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 19238649 - 19238617
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||||||||||||||||||||    
T  19238649 cacttgggttggcctggtggtattggcttggga 19238617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 27965582 - 27965546
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||| |||||||||||||||||||||    
T  27965582 cacttgggttggcctagtggtattggcttgggatctg 27965546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 55427272 - 55427240
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||||||||||||||||||||    
T  55427272 cacttgggttggcctggtggtattggcttggga 55427240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 29195099 - 29195131
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  29195099 cacttgggttggcctggtggtgttggcttggga 29195131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 37109423 - 37109391
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  37109423 cacttgggttggcctagtggtattggcttggga 37109391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 37443706 - 37443742
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  37443706 cacttgggttgacctagtggtattggcttgggatctg 37443742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 37720286 - 37720254
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||| |||||||||||||    
T  37720286 cacttgggttggcctggtgttattggcttggga 37720254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 47044721 - 47044757
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  47044721 cacttggattggcctggtggtattgacttgggatctg 47044757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 41487366 - 41487398
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||||||||||||||||||||    
T  41487366 cacttgggttggcctggtggtattggcttggga 41487398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 48771942 - 48771978
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||| |||||||||||||||||||||||    
T  48771942 cacttgggttggcttggtggtattggcttgggatctg 48771978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 39499791 - 39499753
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctgtg 314  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  39499791 cacttgggttggcctagtggtattggcttgggacctgtg 39499753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 305
Target Start/End: Original strand, 30579339 - 30579368
Alignment:
Q  276 cacttgggttggcctggtggtattggcttg 305  Q
    ||||||||||||||||||||||||||||||    
T  30579339 cacttgggttggcctggtggtattggcttg 30579368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 43590914 - 43590943
Alignment:
Q  279 ttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||||||||||||    
T  43590914 ttgggttggcctggtggtattggcttggga 43590943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 4161295 - 4161327
Alignment:
Q  279 ttgggttggcctggtggtattggcttgggatct 311  Q
    ||||||||| |||||||||||||||||||||||    
T  4161295 ttgggttggtctggtggtattggcttgggatct 4161327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 5273662 - 5273630
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  5273662 cacttgggttggcctggtggtgttggcttggga 5273630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 15905745 - 15905713
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||| |||||||||||||||    
T  15905745 cacttgggttggcctggcggtattggcttggga 15905713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 306
Target Start/End: Original strand, 19553460 - 19553488
Alignment:
Q  278 cttgggttggcctggtggtattggcttgg 306  Q
    |||||||||||||||||||||||||||||    
T  19553460 cttgggttggcctggtggtattggcttgg 19553488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 21854552 - 21854588
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  21854552 cacttgggttggcctgatggtattggctagggatctg 21854588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 23301674 - 23301642
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||||||| |||||||    
T  23301674 cacttgggttggcctggtggtattgacttggga 23301642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 25021407 - 25021375
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  25021407 cacttgggttggcctagtggtattggcttggga 25021375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 26459482 - 26459450
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  26459482 cacttgggttggcctagtggtattggcttggga 26459450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 39631848 - 39631880
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  39631848 cacttgggttggcctagtggtattggcttggga 39631880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 42836073 - 42836041
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  42836073 cacttgggttggcctagtggtattggcttggga 42836041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 21589292 - 21589324
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||||||||||||||||||||    
T  21589292 cacttgggttggcctggtggtattggcttggga 21589324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 16436621 - 16436654
Alignment:
Q  275 tcacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||| |||||||||||||||||    
T  16436621 tcacttgggttggcctagtggtattggcttggga 16436654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 16457814 - 16457846
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||| |||||||||||||||||||||||||||    
T  16457814 cacttaggttggcctggtggtattggcttggga 16457846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 21549209 - 21549177
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  21549209 cacttgggttggcctagtggtattggcttggga 21549177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 26598528 - 26598564
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  26598528 cacttggattggcctagtggtattggcttgggatctg 26598564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 29075785 - 29075821
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||| |||| |||||||||||||||||||||    
T  29075785 cacttgggtttgcctagtggtattggcttgggatctg 29075821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 37480079 - 37480111
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||||||||||||||||||||||    
T  37480079 cacttgggttggcctggtggtattggcttggga 37480111  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 7799107 - 7799075
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||| |||||||||||||||||||||    
T  7799107 cacttgggttgtcctggtggtattggcttggga 7799075  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 16381726 - 16381690
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  16381726 cacttgggttggcctagtggtataggcttgggatctg 16381690  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 16918650 - 16918614
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  16918650 cacttgggttggcctagtggtattggtttgggatctg 16918614  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 23052595 - 23052563
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||| |||||||||||||||||||||||||||    
T  23052595 cacttaggttggcctggtggtattggcttggga 23052563  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 37756043 - 37756011
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||| |||||||||||||||||||    
T  37756043 cacttgggttggcttggtggtattggcttggga 37756011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 42327467 - 42327435
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  42327467 cacttgggttggcctagtggtattggcttggga 42327435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 42602558 - 42602590
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  42602558 cacttgggttggcctagtggtattggcttggga 42602590  T

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Target: scaffold1367 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 910 - 876
Alignment:
Q  278 cttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||| ||||||||||||||||||||||||||||    
T  910 cttggggtggcctggtggtattggcttgggatctg 876  T

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Target: scaffold0299 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 312
Target Start/End: Original strand, 11534 - 11568
Alignment:
Q  278 cttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||| ||||||||||||||||||||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctg 11568  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 8485003 - 8485041
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctgtg 314  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  8485003 cacttgggttggcctggtggtatttgcttgggacctgtg 8485041  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 968366 - 968398
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||| ||||||||||||||||||||||||||    
T  968366 cacttgagttggcctggtggtattggcttggga 968398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 2203496 - 2203528
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  2203496 cacttgggttggcctagtggtattggcttggga 2203528  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 3624584 - 3624616
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  3624584 cacttgggttggcctagtggtattggcttggga 3624616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 4830491 - 4830527
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4830491 cacttgggttggcctggtggtatttgtttgggatctg 4830527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 6436627 - 6436595
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||| |||||||||||||||||||||    
T  6436627 cacttgggttgccctggtggtattggcttggga 6436595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 6530811 - 6530843
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  6530811 cacttgggttggcctggtggtgttggcttggga 6530843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 16852344 - 16852376
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  16852344 cacttgggttggcctagtggtattggcttggga 16852376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 18540302 - 18540334
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  18540302 cacttgggttggcctagtggtattggcttggga 18540334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 19703559 - 19703527
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  19703559 cacttgggttggcctagtggtattggcttggga 19703527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 22269005 - 22268973
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  22269005 cacttgggttggcctggtggtgttggcttggga 22268973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 23874454 - 23874422
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||| |||||||||||||||||    
T  23874454 cacttgggttggcctagtggtattggcttggga 23874422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 26688869 - 26688901
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||||||| |||||||||||    
T  26688869 cacttgggttggcctggtggtgttggcttggga 26688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 29431015 - 29431047
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||||||||||||| |||||||||||||||    
T  29431015 cacttgggttggcctggcggtattggcttggga 29431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 29858121 - 29858089
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    ||||||| |||||||||||||||||||||||||    
T  29858121 cacttggattggcctggtggtattggcttggga 29858089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0955 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0955
Description:

Target: scaffold0955; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Original strand, 3467 - 3499
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||||| ||||||||||||||||||    
T  3467 cacttgggttggccgggtggtattggcttggga 3499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 10223 - 10259
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||| || |||||||||||||||||    
T  10223 cacttgggttggcctgatgatattggcttgggatctg 10259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 15395 - 15363
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||| ||||||||||||||||||||    
T  15395 cacttgggttggtctggtggtattggcttggga 15363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 32841 - 32805
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||||||||||||||||  |||||||    
T  32841 cacttgggttggcctggtggtattggctgaggatctg 32805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 41705 - 41669
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  41705 cacttgggttggcctagtggtattggcttgagatctg 41669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 38974 - 38942
Alignment:
Q  276 cacttgggttggcctggtggtattggcttggga 308  Q
    |||||||||||| ||||||||||||||||||||    
T  38974 cacttgggttggtctggtggtattggcttggga 38942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 112286 - 112322
Alignment:
Q  276 cacttgggttggcctggtggtattggcttgggatctg 312  Q
    |||||||||||||||||| |||||||||||| |||||    
T  112286 cacttgggttggcctggttgtattggcttggaatctg 112322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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