View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_35 (Length: 297)
Name: NF3018_low_35
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 36160226 - 36159954
Alignment:
| Q |
10 |
aatgcgatggtaggtttgaataacaccgtggaacgacgagaccgtgttgtgcagcagatagaaacatattttgctgatgttgacatgatccttgctgaga |
109 |
Q |
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| T |
36160226 |
aatgcgatggtaggtttgaataacaccgtggaacgacgagaccgtgttgtgcagcagatagaaacatattttgctgatgttgacatgatccttgctgaga |
36160127 |
T |
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| Q |
110 |
tttcacttgatttgtaatgtttctgctcattttagggttttccatttttaagctgattatctaactattttgtttatatctacagtgctaattcagcatt |
209 |
Q |
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| T |
36160126 |
tttcacttgatttgtaatgtttctgctcattttagggttttccattttcaagctgattatctaactattttgtttatatctacagtgctaattcagcatt |
36160027 |
T |
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| Q |
210 |
tgacttctctaagtttgcttctcttgctcgtcaagttaaggataaaagtgaaaggtacctttaacatcctttt |
282 |
Q |
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| T |
36160026 |
tgacttctctaagtttgcttctcttgctcgtcaagttgaggataaaagtgaaaggtacctttaacatcctttt |
36159954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 36154496 - 36154241
Alignment:
| Q |
10 |
aatgcgatggtaggtttgaataacaccgtggaacgacgagaccgtgttgtgcagcagatagaaacatattttgctgatgttgacatgatccttgctgaga |
109 |
Q |
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|||||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
36154496 |
aatgcgattgtatgtttgaataacaccgtggaacgaagagagcgtgttgtgcagcagatagaaacatattttgctgatgttgacatgatacttactgaga |
36154397 |
T |
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| Q |
110 |
tttcacttgatttgtaatgtttctgctcattttagggttttccatttttaagctgattatctaactattttgtttatatctacagtgctaattcagcatt |
209 |
Q |
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| T |
36154396 |
tttcacttgatgtgtaatgtttctgctcattttagggttttccattttcaagttgattatctaactattttgtctatatttacagtgataattcggcatt |
36154297 |
T |
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| Q |
210 |
tgacttctctaagtttgcttctcttgctcgtcaagttaaggataaaagtgaaaggt |
265 |
Q |
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||||||||||| ||| |||||||| ||||||||| || |||| |||||||| |||| |
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| T |
36154296 |
tgacttctctaggttggcttctctagctcgtcaaattgaggagaaaagtgataggt |
36154241 |
T |
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