View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_4 (Length: 589)
Name: NF3018_low_4
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 13 - 573
Target Start/End: Complemental strand, 35450204 - 35449644
Alignment:
| Q |
13 |
taggtatagagacaggtggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450204 |
taggtatagagacaggtggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagagg |
35450105 |
T |
|
| Q |
113 |
accagctttcatcactgcctgcaaaagtttacctttttcaggtagtggtctatttggtgttagtacttcaatcattgattgatcaataattggtgaagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450104 |
accagctttcatcactgcctgcaaaagtttacctttttcaggtagtggtctatttggtgttagtacttcaatcattgattgatcaataattggtgaagaa |
35450005 |
T |
|
| Q |
213 |
acaatgctttcttcacaatctgatgaagacaaagaaaaaccattgtttgagtcaattccttttcttgtaacttgttcatcttcaatgcttgaaactccgg |
312 |
Q |
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| T |
35450004 |
acaatgctttcttcacaatctgaagaagacaaagaaaaaccattgtttgagtcaattccttttcttgtaacttgttcatcttcaatgcttgaaactccgg |
35449905 |
T |
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| Q |
313 |
aaagtggagcattttgttgttgatggaaaactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctttctctaatgatgttgttgat |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449904 |
aaagtggatcattttgttgttgatggaaaactagcttttccaagagaagtctttgacatttttcttgtgcttcatctctttctctaatgatgttgttgat |
35449805 |
T |
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| Q |
413 |
tagatctttaaggttcattagttgttcatcnnnnnnngtgagctcttcttgtgctgttactcttgtttgttcaagctctaaagttgtgtatagaagtgat |
512 |
Q |
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| T |
35449804 |
tagatctttaaggttcattagttgttcatctttttttgtgagttcttcttgtgctgttactcttgtttgttcaagctctaaagttgtgtatagaagtgat |
35449705 |
T |
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| Q |
513 |
tgtctcaaatcctccattgactgcataacaattaagaatcattagtactcaaattgcaaaa |
573 |
Q |
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| T |
35449704 |
tgtctcaaatcctccattgactgcataacaattaagaatcattagtactcaaattgcaaaa |
35449644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 21010303 - 21010434
Alignment:
| Q |
23 |
gacaggtggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagaggaccagctttc |
122 |
Q |
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|||||||||||||||||||||||| | ||||| || || ||| |||||||||| | |||||||||||| | ||| || | ||| | ||||||||||||| |
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| T |
21010303 |
gacaggtggaatctcaaaagactccaatggtggtggtggatgtctccattgaggtaatggtcctgcaagtaaaagggtctgaagcaaaggaccagctttc |
21010402 |
T |
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| Q |
123 |
atcactgcctgcaaaagtttacctttttcagg |
154 |
Q |
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|||||||| || |||||||||||||||||||| |
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| T |
21010403 |
atcactgcttgtaaaagtttacctttttcagg |
21010434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 329 - 490
Target Start/End: Original strand, 21010633 - 21010794
Alignment:
| Q |
329 |
ttgttgatggaaaactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctttctctaatgatgttgttgattagatctttaaggttc |
428 |
Q |
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|||||| ||||||| || |||||| |||| |||||||| ||||||||||||||||||||||||||||| || | ||||||| || ||||| ||||| |
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| T |
21010633 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgcttcatctctttctcttataactttgttgaaaagttcttttaggtta |
21010732 |
T |
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| Q |
429 |
attagttgttcatcnnnnnnngtgagctcttcttgtgctgttactcttgtttgttcaagctc |
490 |
Q |
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|||||||||||| | || ||||||||| ||||||||||||||||||| ||||| |
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| T |
21010733 |
tgtagttgttcatctctttttcttagttcttcttgtactgttactcttgtttgttctagctc |
21010794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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