View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_46 (Length: 250)
Name: NF3018_low_46
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8554832 - 8555071
Alignment:
| Q |
1 |
tctgtctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaatctttccatactgtcttaacctagcagagattctctgaatctg |
100 |
Q |
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| T |
8554832 |
tctgtctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaatcttaccatactgtcttaacctagcagagattctctgaatctg |
8554931 |
T |
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| Q |
101 |
ttctgcacttggtgatctaattccattgttgtagtaaagatccttcaatattcttatctgatctgttgttggtgtccaccttgtactactttgtctgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554932 |
ttctgcacttggtgatctaattccattgttgtagtaaagatccttcaatattcttatctgatctgttgttggtgtccaccttgtactactttgtctgctt |
8555031 |
T |
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| Q |
201 |
cccataatcccattgtttggtgaatgttgttgtgtctgtg |
240 |
Q |
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| T |
8555032 |
cccataatcccattgtttggtgaatgttgttgtgtctgtg |
8555071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 35184617 - 35184665
Alignment:
| Q |
3 |
tgtctttctctagctttgtgattttgaaaccaataaaagacatttttgc |
51 |
Q |
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| T |
35184617 |
tgtctttctctagctttgtgattttgaaaccaatagaacacattcttgc |
35184665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 40004909 - 40004968
Alignment:
| Q |
6 |
ctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaatctttcca |
65 |
Q |
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| T |
40004909 |
ctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttcca |
40004968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 45304828 - 45304887
Alignment:
| Q |
6 |
ctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaatctttcca |
65 |
Q |
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|||||||| ||||||||||| ||||||||||| || ||||||||||||||||| |||||| |
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| T |
45304828 |
ctttctcttgctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttcca |
45304887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 40220637 - 40220578
Alignment:
| Q |
6 |
ctttctctagctttgtgattttgaaaccaataaaagacatttttgccttcaatctttcca |
65 |
Q |
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| T |
40220637 |
ctttctctggctttgtgattctgaaaccaatagaaaacatttttgccttcaatttttcca |
40220578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24023515 - 24023474
Alignment:
| Q |
1 |
tctgtctttctctagctttgtgattttgaaaccaataaaaga |
42 |
Q |
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||||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
24023515 |
tctgtgtttttctagctttgtgattttggaaccaataaaaga |
24023474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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