View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_5 (Length: 577)

Name: NF3018_low_5
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_5
NF3018_low_5
[»] chr8 (20 HSPs)
chr8 (342-577)||(9253667-9253902)
chr8 (155-286)||(9254146-9254277)
chr8 (288-350)||(9254104-9254166)
chr8 (39-114)||(9254279-9254356)
chr8 (74-211)||(4647754-4647894)
chr8 (74-165)||(18844592-18844683)
chr8 (104-210)||(17810326-17810435)
chr8 (74-211)||(17103864-17104004)
chr8 (74-211)||(27869236-27869376)
chr8 (74-165)||(17824664-17824755)
chr8 (106-169)||(19256242-19256305)
chr8 (103-169)||(21219284-21219350)
chr8 (103-169)||(26399051-26399117)
chr8 (103-169)||(32247936-32248002)
chr8 (77-210)||(29345072-29345208)
chr8 (104-169)||(29350951-29351016)
chr8 (84-141)||(30687944-30688001)
chr8 (74-210)||(6817052-6817191)
chr8 (74-210)||(24193196-24193335)
chr8 (74-138)||(43431634-43431698)
[»] chr5 (16 HSPs)
chr5 (74-210)||(11927786-11927925)
chr5 (104-169)||(31853132-31853197)
chr5 (74-169)||(27428056-27428151)
chr5 (74-210)||(23408980-23409120)
chr5 (104-169)||(10420296-10420361)
chr5 (74-211)||(17039630-17039770)
chr5 (74-211)||(20959508-20959648)
chr5 (74-210)||(8886851-8886990)
chr5 (106-169)||(17079437-17079500)
chr5 (74-169)||(23975635-23975730)
chr5 (74-141)||(36196394-36196461)
chr5 (103-169)||(15061002-15061068)
chr5 (104-169)||(33735017-33735082)
chr5 (101-169)||(4125232-4125300)
chr5 (74-210)||(8108860-8108999)
chr5 (74-211)||(18413556-18413695)
[»] chr3 (31 HSPs)
chr3 (74-169)||(1628211-1628306)
chr3 (74-169)||(11085386-11085481)
chr3 (104-210)||(36543775-36543884)
chr3 (74-169)||(27212825-27212920)
chr3 (104-210)||(36564439-36564548)
chr3 (104-165)||(30219364-30219425)
chr3 (74-210)||(15490031-15490169)
chr3 (74-209)||(11915754-11915892)
chr3 (74-169)||(26830486-26830581)
chr3 (103-169)||(6718735-6718801)
chr3 (101-210)||(29956395-29956507)
chr3 (101-210)||(30005550-30005662)
chr3 (103-211)||(5565747-5565858)
chr3 (76-211)||(27182657-27182793)
chr3 (74-210)||(27449084-27449223)
chr3 (74-141)||(7623603-7623670)
chr3 (74-169)||(9652574-9652669)
chr3 (74-169)||(17582345-17582440)
chr3 (106-169)||(18091591-18091654)
chr3 (74-169)||(18539800-18539895)
chr3 (74-169)||(20615387-20615482)
chr3 (74-169)||(28389969-28390064)
chr3 (74-165)||(49915447-49915538)
chr3 (104-210)||(26098839-26098948)
chr3 (104-210)||(46012728-46012837)
chr3 (106-211)||(13905037-13905145)
chr3 (106-211)||(13921353-13921461)
chr3 (104-169)||(17269648-17269713)
chr3 (84-169)||(23217252-23217337)
chr3 (104-165)||(50665684-50665745)
chr3 (77-169)||(46942486-46942578)
[»] chr4 (17 HSPs)
chr4 (104-169)||(313615-313680)
chr4 (104-169)||(6553832-6553897)
chr4 (74-211)||(16915367-16915507)
chr4 (104-165)||(33914087-33914148)
chr4 (74-165)||(39234940-39235029)
chr4 (74-169)||(32175781-32175876)
chr4 (74-169)||(46286273-46286368)
chr4 (103-169)||(36689704-36689770)
chr4 (77-210)||(9913259-9913395)
chr4 (74-211)||(22128311-22128451)
chr4 (74-210)||(27040025-27040164)
chr4 (74-169)||(3612993-3613088)
chr4 (74-165)||(25147719-25147810)
chr4 (116-210)||(1638487-1638584)
chr4 (74-211)||(30268987-30269127)
chr4 (74-211)||(30283062-30283202)
chr4 (101-210)||(30508012-30508124)
[»] chr2 (12 HSPs)
chr2 (74-170)||(18916443-18916539)
chr2 (74-169)||(13134664-13134759)
chr2 (74-169)||(15636779-15636874)
chr2 (74-211)||(13788054-13788194)
chr2 (104-169)||(35697481-35697546)
chr2 (106-169)||(7093596-7093659)
chr2 (74-169)||(8430292-8430387)
chr2 (74-169)||(37724036-37724131)
chr2 (74-140)||(41736168-41736234)
chr2 (74-139)||(29998633-29998698)
chr2 (106-211)||(43408510-43408618)
chr2 (106-212)||(32008980-32009090)
[»] chr1 (25 HSPs)
chr1 (74-169)||(46865243-46865338)
chr1 (74-210)||(20408160-20408299)
chr1 (104-211)||(18894899-18895009)
chr1 (74-141)||(20580909-20580976)
chr1 (74-169)||(52183678-52183773)
chr1 (103-169)||(18890593-18890659)
chr1 (104-169)||(13308864-13308929)
chr1 (74-211)||(38531169-38531309)
chr1 (74-210)||(29549418-29549557)
chr1 (106-218)||(41120729-41120844)
chr1 (74-141)||(11917786-11917853)
chr1 (74-169)||(12161814-12161909)
chr1 (74-141)||(13523033-13523100)
chr1 (74-169)||(16913621-16913716)
chr1 (74-169)||(22158802-22158897)
chr1 (74-169)||(23457897-23457992)
chr1 (104-210)||(9109975-9110084)
chr1 (104-210)||(12720839-12720948)
chr1 (74-140)||(15243085-15243151)
chr1 (127-169)||(18787956-18787998)
chr1 (74-168)||(41071880-41071974)
chr1 (104-169)||(12174810-12174875)
chr1 (106-211)||(46790032-46790140)
chr1 (105-209)||(25787998-25788105)
chr1 (104-216)||(50845324-50845439)
[»] chr6 (14 HSPs)
chr6 (103-169)||(23281815-23281881)
chr6 (104-169)||(33547576-33547641)
chr6 (74-169)||(21691540-21691635)
chr6 (74-211)||(28364911-28365051)
chr6 (74-210)||(9892963-9893102)
chr6 (106-169)||(5360441-5360504)
chr6 (74-169)||(12845003-12845098)
chr6 (106-169)||(20692855-20692918)
chr6 (74-169)||(22579393-22579488)
chr6 (74-169)||(26939587-26939682)
chr6 (104-210)||(2992645-2992754)
chr6 (127-169)||(9060143-9060185)
chr6 (104-169)||(1939286-1939351)
chr6 (106-210)||(14886593-14886700)
[»] scaffold0087 (1 HSPs)
scaffold0087 (104-169)||(37831-37896)
[»] chr7 (21 HSPs)
chr7 (104-169)||(1907385-1907450)
chr7 (74-169)||(816235-816330)
chr7 (104-210)||(23232069-23232178)
chr7 (78-168)||(25777157-25777247)
chr7 (74-210)||(22486394-22486533)
chr7 (74-210)||(10222630-10222768)
chr7 (74-169)||(11036507-11036602)
chr7 (74-169)||(11890191-11890286)
chr7 (74-169)||(20174020-20174115)
chr7 (74-169)||(22501594-22501689)
chr7 (74-141)||(23577261-23577328)
chr7 (74-169)||(23699869-23699964)
chr7 (74-169)||(31425555-31425650)
chr7 (104-169)||(15014449-15014514)
chr7 (104-169)||(28800908-28800973)
chr7 (77-170)||(32267350-32267443)
chr7 (74-211)||(37135284-37135424)
chr7 (104-169)||(42926464-42926529)
chr7 (104-169)||(47523694-47523759)
chr7 (106-210)||(18217861-18217968)
chr7 (103-211)||(48933165-48933276)
[»] scaffold0599 (1 HSPs)
scaffold0599 (74-209)||(7505-7643)
[»] scaffold0058 (1 HSPs)
scaffold0058 (74-165)||(74589-74680)
[»] scaffold0009 (1 HSPs)
scaffold0009 (74-169)||(219636-219731)
[»] scaffold0717 (1 HSPs)
scaffold0717 (104-169)||(963-1028)
[»] scaffold0284 (1 HSPs)
scaffold0284 (104-169)||(1563-1628)
[»] scaffold0006 (1 HSPs)
scaffold0006 (76-169)||(121031-121124)
[»] scaffold0240 (1 HSPs)
scaffold0240 (106-169)||(15034-15097)
[»] scaffold0047 (1 HSPs)
scaffold0047 (74-165)||(58582-58673)
[»] scaffold0001 (1 HSPs)
scaffold0001 (74-169)||(84303-84398)
[»] scaffold0108 (1 HSPs)
scaffold0108 (107-169)||(12685-12747)
[»] scaffold0211 (1 HSPs)
scaffold0211 (104-169)||(19182-19247)
[»] scaffold0007 (1 HSPs)
scaffold0007 (106-211)||(3774-3882)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 342 - 577
Target Start/End: Complemental strand, 9253902 - 9253667
Alignment:
Q  342 ttataagaattatgtgctccaaactttacttaaacacaaagatctagaaagattacaatattacaattctctccacatgattatcaaatatgatgagtca 441  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9253902 ttataagaattatgtgctccaaactttacttaaacagaaagatctagcaagattacaatattacaattctctccacatgattatcaaatatgatgagtca 9253803  T
Q  442 tactcaacaataatgttgaaaaagctttctttttctcgaatgtttaataatctaatcataaagcatagcaaaagtgacgtaaatggatcatactactttt 541  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||    
T  9253802 tactgaacaataatgttgaaaaagctttctttttctcgaatgtttaataatctaatcataaagcatatcaaaattgacgtaaatggatcatcctactttt 9253703  T
Q  542 gaaatttgttctcttcaactttatttccttgacaac 577  Q
    ||||||||||||||||||||||||||||||||||||    
T  9253702 gaaatttgttctcttcaactttatttccttgacaac 9253667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 9254277 - 9254146
Alignment:
Q  155 agggattttatttttcatcactcatttttctccctaattctgtttttctagtagtgtgtatataatgaattaaaattactcttaagagccatatattaat 254  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9254277 agggattttatttttcatcactcatttttctccctaattatgtttttctagtagtgtgtatataatgaattaaaattactcttaagagccatatattgat 9254178  T
Q  255 ttgacaatgtatttataaatgatagataatca 286  Q
    ||||||||||||||||||||||||||||||||    
T  9254177 ttgacaatgtatttataaatgatagataatca 9254146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 9254166 - 9254104
Alignment:
Q  288 tttataaatgatagataatcaattttacatcggttgaattacgctcaatccaaattataagaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9254166 tttataaatgatagataatcaattttacatcggttgaattaggctcaatccaaattataagaa 9254104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 9254356 - 9254279
Alignment:
Q  39 gaagtagttttatcttatatcactgctnnnnnnnn--ttagtgagagaaatttagagaaggatgatgtgaaatccctt 114  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  9254356 gaagtagttttatcttatatcactgctaaaaaaaaaattagtgagagaaatttagagaaggatgatgtgaaatccctt 9254279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 4647894 - 4647754
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||||||||||| | || |||  ||||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  |     
T  4647894 ttagtgagagaaattttgtgagggaaaatgtgaaatccctctctaattccgtcactaaattttgcgactatgaaatttgtgaggaatttcattttttccg 4647795  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  4647794 tcactaatttccctcgctaattttgttttttctagtagtgt 4647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 18844683 - 18844592
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||| ||||||  |  |||||||||| |||||||| |||| ||||||||||||| | ||||||| ||||| |||||||    
T  18844683 ttagtgagggaaatttagtgaaggaaaacatgaaatccctctctaattttgttattaaattttgcgaccaaaaaatttgtgaggaattttat 18844592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 17810326 - 17810435
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||||||| ||||||||||||||| |  |||||| ||||| |||| ||||||  | ||||| ||||| ||| |||||| || ||||    
T  17810326 tgaaatccctctctaatttcgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttt 17810425  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  17810426 tctagtagtg 17810435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 17104004 - 17103864
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggatttta--tttttca 171  Q
    |||||||| ||||||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| ||||||  |||| |     
T  17104004 ttagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaattttatgttttccg 17103905  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||  |||| |||| |||||| || |||||||||||||||    
T  17103904 tcacaaatttctctctctaattttgttttttctagtagtgt 17103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 27869236 - 27869376
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    ||||||||||| |||||| || |||  |  ||||||| || ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||  ||    
T  27869236 ttagtgagagatatttagtgagggaaaacatgaaatctctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttcca 27869335  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  27869336 tcactaatttccctcgctaattttgctttttctagtagtgt 27869376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 17824755 - 17824664
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||||||    
T  17824755 ttagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaattttat 17824664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 19256242 - 19256305
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||||||||||    
T  19256242 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattttattttt 19256305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 21219350 - 21219284
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| | | ||||||||||||||| | ||||||||||||  |||| ||||||    
T  21219350 gtgaaatccctctctaattccatcactaaattttgcgaccaaaaaatttatgagtaatttcattttt 21219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 26399117 - 26399051
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| ||| ||||||||||||||| |   ||||| |||| ||||||||||||    
T  26399117 gtgaaatccctctctaattccgtcactaaattttgcgaccaacgaatttgtgagagattttattttt 26399051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 32247936 - 32248002
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||    
T  32247936 gtgaaatccctctctaattccgtcactaaattttgcgaccatagaatttgtgaggaatttcattttt 32248002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 29345072 - 29345208
Alignment:
Q  77 gtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catca 174  Q
    ||||| |||||||||||| |||  | |||||||||||  |||||| ||| |||||||||||| || |  |||||| |||  ||||||||||||  | |||    
T  29345072 gtgagggaaatttagagagggaaaacgtgaaatccctccctaattccgtcactaaattttgccactaagaaatttgtgaaagattttattttttccgtca 29345171  T
Q  175 ctcatttttctccctaa-ttctgtttttctagtagtg 210  Q
    || ||||  |||||||| || | ||||||||||||||    
T  29345172 ctaatttccctccctaatttttctttttctagtagtg 29345208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 29350951 - 29351016
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  29350951 tgaaatccctctctaattgcgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 29351016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 30687944 - 30688001
Alignment:
Q  84 aaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    |||||||| ||||||  |||| |||||||| ||||||| ||| |||||||||||||||    
T  30687944 aaatttagtgaaggaaaatgtaaaatccctctctaattccgtcactaaattttgcgac 30688001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 6817052 - 6817191
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  |||| ||||| || ||||||| ||| ||||||||||| ||| |  |||||| ||||| |||| ||||||  |     
T  6817052 ttagtgagggaaatttagtgagggaaaatgtaaaatctctctctaattccgtcactaaattttgtgaccaagaaatttgtgaggaatttcattttttccg 6817151  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||| ||  |||||| || ||||||||||||||    
T  6817152 tcactgattttccttgctaattttgctttttctagtagtg 6817191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 24193335 - 24193196
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||||||||||| | || |||  |  ||||||| || ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  |     
T  24193335 ttagtgagagaaattttgtgagggaaaacatgaaatctctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccg 24193236  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  24193235 tcactaatttccctcgctaattttgctttttctagtagtg 24193196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 43431698 - 43431634
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgc 138  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||||||| ||||||||||||    
T  43431698 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaatttcgtcactaaattttgc 43431634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 11927925 - 11927786
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||| |||||||| |||  | ||||||||||| ||||||| ||| |||||||||||||||||   ||||| |||||||||||||||||  ||    
T  11927925 ttagtgagggaattttagagacggaaaacgtgaaatccctctctaattccgtcactaaattttgcgacgaagtaatttgtgagggattttattttttcca 11927826  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    || || |||| ||||||||||| || |||||||| |||||    
T  11927825 tctctaatttatctccctaattttgctttttctaatagtg 11927786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 31853197 - 31853132
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||| || ||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||    
T  31853197 tgaaatctctctctaattccgtcactaaattttgcgaccataaaatttatgagggattttattttt 31853132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 27428151 - 27428056
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||  ||||||||||| |||  | ||||||||||| ||||||| ||| ||||||||||||||| | | ||||||| ||  |||||||||||    
T  27428151 ttagtgaggaaaatttagagagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttattagcaattttattttt 27428056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 23408980 - 23409120
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt---c 170  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||  |  |||||| ||||| |||| ||||||   |    
T  23408980 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgatcaagaaatttgtgaggaatttcatttttttcc 23409079  T
Q  171 atcactcatttttctccctaattctg-tttttctagtagtg 210  Q
     ||||| ||||||||| |||||| || ||||||||||||||    
T  23409080 gtcactaatttttctcgctaattttgctttttctagtagtg 23409120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 10420361 - 10420296
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| |||||||| || ||||||||||||||| |  ||| || |||||||||||||||||    
T  10420361 tgaaatccctctctaattttgtcactaaattttgcgaccaacaaaattgtgagggattttattttt 10420296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 17039770 - 17039630
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||| ||| || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  |     
T  17039770 ttagtgagggaaatatagtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccg 17039671  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||| ||| |||||| || |||||||||||||||    
T  17039670 tcactaattttcctcactaattttgctttttctagtagtgt 17039630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 20959508 - 20959648
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| |||||||||||| |||  | |||||||| || ||||||| ||| |||||||||| |||| |   ||||| ||||| |||||||||||  |     
T  20959508 ttagtgagggaaatttagagagggaaaacgtgaaatctctctctaattccgtcactaaattttacgactaaggaatttgtgaggaattttattttttccg 20959607  T
Q  172 tcactcatttttctccctaattct-gtttttctagtagtgt 211  Q
    ||| | ||||| |||||||||| |  |||||||||||||||    
T  20959608 tcagtgattttcctccctaattttactttttctagtagtgt 20959648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 8886990 - 8886851
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattt--tatttttca 171  Q
    |||||||| ||||||||| || |||  |||| |||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| ||||  | ||||||     
T  8886990 ttagtgagggaaatttagtgagggaaaatgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcatttttttcg 8886891  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||  ||||| ||| |||||| || ||||||||||||||    
T  8886890 tcacaaattttcctcgctaattttgctttttctagtagtg 8886851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 17079437 - 17079500
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| ||| ||||||||||||||| |  |||||| | |||||||||||||||    
T  17079437 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtaagggattttattttt 17079500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 23975635 - 23975730
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  23975635 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 23975730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 36196394 - 36196461
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    |||||||| ||||||| | || |||  ||||||||||||| ||||||| ||| |||||||||||||||    
T  36196394 ttagtgagggaaattttgtgagggaaaatgtgaaatccctctctaattccgtcactaaattttgcgac 36196461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 15061002 - 15061068
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  15061002 gtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 15061068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 33735082 - 33735017
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||| |||| | ||||| ||| ||||||||||||||| |   |||||||||||||||||||||||    
T  33735082 tgaaacccctctttaattccgtcactaaattttgcgaccaaggaatttatgagggattttattttt 33735017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 4125300 - 4125232
Alignment:
Q  101 atgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| || ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  4125300 atgtgaaatctctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 4125232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 8108999 - 8108860
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||||||||||| | || |||  |  |||||| ||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  |     
T  8108999 ttagtgagagaaattttgtgagggaaaacatgaaattcctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttttccg 8108900  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  8108899 tcactaatttccctctctaattttgctttttctagtagtg 8108860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 18413556 - 18413695
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttatttttca-- 171  Q
    |||||||| |||||||||||| |||  | ||||| ||||||| ||||| |||   |||||||| |||| |  ||| || |||| |||||||||||| |      
T  18413556 ttagtgagggaaatttagagagggaaaacgtgaattccctttttaattccgtcgttaaattttacgactaagaaacttgtgagtgattttattttttaag 18413655  T
Q  172 tcactcatttttctccctaattctgtttttctagtagtgt 211  Q
    ||||| ||||||||| |||||  | ||||| |||||||||    
T  18413656 tcactaatttttctctctaatcttatttttttagtagtgt 18413695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 1628211 - 1628306
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||||||||| |||  | ||||||||||| ||||||||||| |||||||||| |||| |   ||||||||||| |||||||||||    
T  1628211 ttagtgagggaaatttagagagggaaaacgtgaaatccctctctaatttcgtcactaaattttacgactaaggaatttatgaggaattttattttt 1628306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 11085481 - 11085386
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||||||||||| || |||   |||||||||||| ||||||| ||| ||||||||||||||| | | ||||||||||| |||| ||||||    
T  11085481 ttagtgagagaaatttagtgagggaaattgtgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttatgaggaatttcattttt 11085386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 36543775 - 36543884
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaa-ttctgtttt 200  Q
    |||||||||| ||||||||||| ||||||||||||||| | | ||| | |||| ||||||||||||  ||||||| ||||| |||||||| || | ||||    
T  36543775 tgaaatccctctctaatttcgtcactaaattttgcgaccaaagaatctgtgagagattttattttttccatcactaattttcctccctaatttttctttt 36543874  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  36543875 tctagtagtg 36543884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 27212920 - 27212825
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||||||||| | |  | ||||||||||| | ||||| ||| ||||||||||||||| | | ||||| |||||||||||||||||    
T  27212920 ttagtgagggaaatttagagaggaaaaacgtgaaatccctctttaattccgtcactaaattttgcgactaaagaatttgtgagggattttattttt 27212825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 36564548 - 36564439
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaa-ttctgtttt 200  Q
    |||||||||| ||||||||||| |||||||| |||||| | | ||| | | |||||||||||||||  ||||||| ||||| |||||||| || | ||||    
T  36564548 tgaaatccctctctaatttcgtcactaaattctgcgaccaaagaatctgtcagggattttattttttccatcactaattttcctccctaatttttctttt 36564449  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  36564448 tctagtagtg 36564439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 30219364 - 30219425
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||||| ||||||| ||| ||||||||||||||| | ||||||||||||| |||||||    
T  30219364 tgaaatccctctctaattccgtcactaaattttgcgaccaaaaaatttatgaggaattttat 30219425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 15490031 - 15490169
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggatttta--tttttca 171  Q
    |||||||| ||||||||| ||  ||  | ||||||||||| | |||||| || ||||||||||||||| | ||||||| |||| |||||||  ||||||     
T  15490031 ttagtgagggaaatttagtgagagaaaacgtgaaatccctctttaattt-gtcactaaattttgcgaccaaaaaatttgtgagagattttatttttttcg 15490129  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| |||||||||||| ||| || ||||| ||||||||    
T  15490130 tcactaatttttctccctgattttgctttttttagtagtg 15490169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 11915754 - 11915892
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattt--tatttttca 171  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| |  |||||||||||| ||||  |||||| |     
T  11915754 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaatttcatattttccg 11915853  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagt 209  Q
    ||||| ||||  ||| |||||| || |||||||||||||    
T  11915854 tcactaatttccctcgctaattttgctttttctagtagt 11915892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 26830581 - 26830486
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||||||||| |||  | ||||||||||| ||||||| ||| || |||||||||||| |   ||||| ||||| |||||||||||    
T  26830581 ttagtgagggaaatttagagagggaaaacgtgaaatccctctctaattccgtcacaaaattttgcgaccatggaatttgtgaggaattttattttt 26830486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 6718735 - 6718801
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||||||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  6718735 gtgaaatccctttctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 6718801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 29956395 - 29956507
Alignment:
Q  101 atgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattct-gt 197  Q
    ||||||||||||||||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  ||||||| ||||  ||| |||||| |  |    
T  29956395 atgtgaaatccctttctaattccgtcactaaattttgcgaccatggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttact 29956494  T
Q  198 ttttctagtagtg 210  Q
    |||||||||||||    
T  29956495 ttttctagtagtg 29956507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 30005550 - 30005662
Alignment:
Q  101 atgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattct-gt 197  Q
    ||||||||||||||||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  ||||||| ||||  ||| |||||| |  |    
T  30005550 atgtgaaatccctttctaattccgtcactaaattttgcgaccatggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttact 30005649  T
Q  198 ttttctagtagtg 210  Q
    |||||||||||||    
T  30005650 ttttctagtagtg 30005662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 5565747 - 5565858
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-ttt 199  Q
    ||||||||||| |||||||  || ||||||||||||||| |  |||||| |||| ||||||||||||  | ||||| ||||  |||||| ||| || |||    
T  5565747 gtgaaatccctctctaattatgtcactaaattttgcgaccaagaaatttgtgagagattttattttttccgtcactaatttccctccctgattttgcttt 5565846  T
Q  200 ttctagtagtgt 211  Q
    ||||||||||||    
T  5565847 ttctagtagtgt 5565858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 27182793 - 27182657
Alignment:
Q  76 agtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttatttttcatcac 175  Q
    |||||||||||||||| || |||  |   |||||| || ||||||||||| ||||||| ||| ||| |    |||| |||||||||||||||||  ||||    
T  27182793 agtgagagaaatttagtgagggaaaacaagaaatctctctctaatttcgtcactaaatcttgtgaccaagggatttgtgagggattttattttttgtcac 27182694  T
Q  176 tcatttttctccctaattctgttttt-ctagtagtgt 211  Q
    | ||||  |||||||||| ||||||| ||||||||||    
T  27182693 taatttccctccctaattttgtttttcctagtagtgt 27182657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 27449084 - 27449223
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||  |     
T  27449084 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccg 27449183  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  27449184 tcactaatttccctcgctaattttgctttttctagtagtg 27449223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 7623670 - 7623603
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    |||||||| ||||||| | || |||  ||||||||||||| ||||||| ||| |||||||||||||||    
T  7623670 ttagtgagggaaattttgtgagggaaaatgtgaaatccctctctaattccgtcactaaattttgcgac 7623603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 9652574 - 9652669
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  9652574 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgactatgaaatttgtgaggaatttcattttt 9652669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 17582440 - 17582345
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||||||||||    
T  17582440 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatggaatttgtgaggaattttattttt 17582345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 18091654 - 18091591
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| ||| ||||||||||||||| | ||||||| ||||| |||| ||||||    
T  18091654 aaatccctctctaattccgtcactaaattttgcgaccaaaaaatttgtgaggaatttcattttt 18091591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 18539800 - 18539895
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  18539800 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttttgaggaatttcattttt 18539895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 20615482 - 20615387
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||||||||||||  | ||||||| ||| |||||||  || | |||||||| |||| | ||||||| ||||  |||||||||||    
T  20615482 ttagtgagggaaatttagagaaggaaaacgtgaaattcctctctaattctgtcattaaattttacgaccaaaaaatttgtgagatattttattttt 20615387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 28389969 - 28390064
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||||| || |||  | ||||||||| | ||||||| ||| ||||||||||||||| |   ||||| |||| ||||||||||||    
T  28389969 ttagtgagggaaatttagtgagggaaaacgtgaaatccttctctaattccgtcactaaattttgcgaccaacgaatttgtgagagattttattttt 28390064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 49915447 - 49915538
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| |  |||||| | |||||||||||    
T  49915447 ttagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgactaagaaatttgttagggattttat 49915538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 26098839 - 26098948
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  ||||||| ||||  ||| |||||| || ||||    
T  26098839 tgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttt 26098938  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  26098939 tctagtagtg 26098948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 46012837 - 46012728
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| |||||||| || ||||||||||||||  |   ||||| |||| ||||||||||||  | ||||| ||||| |||||| ||| || ||||    
T  46012837 tgaaatccctctctaattttgtcactaaattttgcgatcaaggaatttgtgagagattttattttttccgtcactaattttcctccctgattttgctttt 46012738  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  46012737 tctagtagtg 46012728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 13905145 - 13905037
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  | ||||| ||||  ||| |||||| || ||||||    
T  13905145 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttcgctctctaattttgctttttc 13905046  T
Q  203 tagtagtgt 211  Q
    |||||||||    
T  13905045 tagtagtgt 13905037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 13921353 - 13921461
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  | ||||| ||||| ||| |||||| || ||||||    
T  13921353 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 13921452  T
Q  203 tagtagtgt 211  Q
    |||||||||    
T  13921453 tagtagtgt 13921461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 17269713 - 17269648
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||  | | ||||| ||||| |||||||||||    
T  17269713 tgaaatccctctctaattccgtcactaaattttgcgatcaaagaatttgtgaggaattttattttt 17269648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 23217337 - 23217252
Alignment:
Q  84 aaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| |||  | ||||||||||| ||||||| ||| ||||||||||| ||| | | ||||| ||||| |||| ||||||    
T  23217337 aaatttagagagggaaaacgtgaaatccctctctaattccgtcactaaattttgggaccatagaatttgtgaggaatttgattttt 23217252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 50665745 - 50665684
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||||| ||||||||||| ||||||||||||||  | | ||||| ||||| |||||||    
T  50665745 tgaaatccctctctaatttcgtcactaaattttgcgatcaaagaatttgtgaggaattttat 50665684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 46942486 - 46942578
Alignment:
Q  77 gtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||| ||| |||||||| |||  | ||||||||||| |||||||  || ||||||||||||||| |  ||| || |||||||||| ||||||    
T  46942486 gtgagggaattttagagagggaaaacgtgaaatccctctctaattctgtcactaaattttgcgaccaagaaaattgtgagggatttaattttt 46942578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 313615 - 313680
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| |||||||  |||||||||||||||||| | | |||||||||||||||||||||||    
T  313615 tgaaatccctctctaattatgttactaaattttgcgaccaaagaatttatgagggattttattttt 313680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 6553832 - 6553897
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| |||||||  |||||||||||||||||| |  ||||||||||||||||||||||||    
T  6553832 tgaaatccctctctaattatgttactaaattttgcgaccaagaaatttatgagggattttattttt 6553897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 16915367 - 16915507
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||  ||||||||| || |||  || ||||||| || |||||||| || ||||||||||||||| |  |||||| |||| ||||||||||||  ||    
T  16915367 ttagtgacggaaatttagtgagggaaaatatgaaatctctctctaattttgtcactaaattttgcgaccaacaaatttgtgagagattttattttttcca 16915466  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||| |||||| ||| || |||||||||||||||    
T  16915467 tcactaattttcctccctgattttgctttttctagtagtgt 16915507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 33914087 - 33914148
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||||| ||||||| ||| ||||||||||||||| | ||||||||||||| |||||||    
T  33914087 tgaaatccctctctaattccgtcactaaattttgcgaccaaaaaatttatgaggaattttat 33914148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 39234940 - 39235029
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||||||||||  | |||||||| ||  ||||||| |||||||||||||||||| | ||||||| ||||  |||||||    
T  39234940 ttagtgagggaaatttagagaaggaaaacgtgaaatctct--ctaattttgttactaaattttgcgaccaaaaaatttgtgagaaattttat 39235029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 32175876 - 32175781
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||||||||||    
T  32175876 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaattttattttt 32175781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 46286368 - 46286273
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||||||||||    
T  46286368 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaattttattttt 46286273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 36689704 - 36689770
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| ||| ||||||||||||||| | ||||||||||||  |||| ||||||    
T  36689704 gtgaaatccctctctaattccgtcactaaattttgcgaccaaaaaatttatgagaaatttcattttt 36689770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 210
Target Start/End: Original strand, 9913259 - 9913395
Alignment:
Q  77 gtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catca 174  Q
    ||||| ||| |||||||| |||  | ||||||||||| |||||||  || ||||||||||||||| |  ||| || |||||||||| ||||||  | |||    
T  9913259 gtgagggaattttagagagggaaaacgtgaaatccctctctaattctgtcactaaattttgcgaccaagaaaattgtgagggatttaattttttccgtca 9913358  T
Q  175 ctcatttttctccctaattct-gtttttctagtagtg 210  Q
    || ||||| |||||||||| |  ||||||||||||||    
T  9913359 ctaattttcctccctaattttaatttttctagtagtg 9913395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 22128451 - 22128311
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  | ||||||||||| |||||||  || ||||||||||||||| |   ||||| |||| ||||||||||||  |     
T  22128451 ttagtgagggaaatttagtgagggaaaacgtgaaatccctctctaattctgtcactaaattttgcgaccaaggaatttgtgagagattttattttttccg 22128352  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  |||||| ||| || |||||||||||||||    
T  22128351 tcactaatttccctccctgattttgttttttctagtagtgt 22128311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 27040164 - 27040025
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| ||||| |||||  |     
T  27040164 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaattttcttttttccg 27040065  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  27040064 tcactaatttccctcgctaattttgctttttctagtagtg 27040025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 3612993 - 3613088
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||||| |||||||| | |  | ||||||| ||| ||||||||||| |||||| |||||||| |   ||||| ||||||| |||||||||    
T  3612993 ttagtgagagaattttagagaggaaaaacgtgaaattcctctctaatttcgtcactaaaatttgcgaccaaggaatttgtgagggaatttattttt 3613088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 25147719 - 25147810
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||||||    
T  25147719 ttagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaattttat 25147810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 1638487 - 1638584
Alignment:
Q  116 ctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctgttttt-ctagtagtg 210  Q
    |||||| ||| ||||||||||||||| | | ||| | |||||||||||||||||  | ||||| ||||  |||||||||| ||||||| |||||||||    
T  1638487 ctaattccgtcactaaattttgcgaccaaagaatatgtgagggattttattttttccgtcactaatttccctccctaattttgtttttcctagtagtg 1638584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 30269127 - 30268987
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  |||| ||||| || ||||||| ||| ||||||||||||||| | | |||||  |||| |||| ||||||  |     
T  30269127 ttagtgagggaaatttagcgagggaaaatgtaaaatctctctctaattccgtcactaaattttgcgaccaaataatttgcgaggaatttcattttttccg 30269028  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  30269027 tcactgatttccctcgctaattttgctttttctagtagtgt 30268987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 30283062 - 30283202
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  |||| ||||| || ||||||| ||| ||||||||||||||| | | |||||  |||| |||| ||||||  |     
T  30283062 ttagtgagggaaatttagcgagggaaaatgtaaaatctctctctaattccgtcactaaattttgcgaccaaataatttgcgaggaatttcattttttccg 30283161  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  30283162 tcactgatttccctcgctaattttgctttttctagtagtgt 30283202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 210
Target Start/End: Original strand, 30508012 - 30508124
Alignment:
Q  101 atgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggatttta--tttttcatcactcatttttctccctaattctg-t 197  Q
    |||| |||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| ||||||  |||||| ||||  ||||| ||| |||||| || |    
T  30508012 atgtaaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattttatttttttcgtcacagattttcctcgctaattttgct 30508111  T
Q  198 ttttctagtagtg 210  Q
    |||||||||||||    
T  30508112 ttttctagtagtg 30508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 18916539 - 18916443
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttatttttc 170  Q
    |||||||||||||||||| || |||  |  |||||||||| |||||||  || ||||||||||||||  | ||||||| ||||||||||||||||||    
T  18916539 ttagtgagagaaatttagggagggaaaacatgaaatccctctctaattcagtcactaaattttgcgatcaaaaaatttgtgagggattttatttttc 18916443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 13134759 - 13134664
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||| ||||||||||| |||  |  ||||||||||||||||||| || | |||||||| |||| | |||| || |||||||||||||||||    
T  13134759 ttagtgagaaaaatttagagatggaaaacttgaaatccctttctaattttgtcaataaattttacgactaaaaaaattgtgagggattttattttt 13134664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 15636874 - 15636779
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||||||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  15636874 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaatttcgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 15636779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 13788194 - 13788054
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    ||||||||  |||||||| || |||  |||| |||||||| ||||||||||| ||||||||||||||| |   ||||| ||||| |||| ||||||  |     
T  13788194 ttagtgaggaaaatttagtgagggaaaatgtaaaatccctctctaatttcgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccg 13788095  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  13788094 tcactgatttccctcgctaattttgctttttctagtagtgt 13788054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 35697481 - 35697546
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||| ||| ||||||| ||| ||||||||||||||| | ||||||| |||| ||||||||||||    
T  35697481 tgaaattcctctctaattccgtcactaaattttgcgaccaaaaaatttgtgagagattttattttt 35697546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 7093596 - 7093659
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||||| || ||||||||||||||| | ||||||| ||||| |||| ||||||    
T  7093596 aaatccctctctaattttgtcactaaattttgcgaccaaaaaatttgtgaggaatttcattttt 7093659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 8430292 - 8430387
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| |||||||||| |||  | ||||||| ||||| |||||||||||    
T  8430292 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttacgatcataaaatttgtgaggaattttattttt 8430387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 37724131 - 37724036
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||||||||||| || |||  | |||||||||||  |||||  ||| ||||||||||||||| | | ||||| ||||| |||| ||||||    
T  37724131 ttagtgagagaaatttagtgagggaaaacgtgaaatccctcgctaataccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttt 37724036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 41736168 - 41736234
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcga 140  Q
    ||||||||  |||||||| || |||  |||| |||||||| ||||||||||| ||||||||||||||    
T  41736168 ttagtgaggaaaatttagtgagggaaaatgtaaaatccctctctaatttcgtcactaaattttgcga 41736234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 29998698 - 29998633
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcg 139  Q
    |||||||| ||| ||||||||||||  | ||||||||| | ||||||| ||| |||||||||||||    
T  29998698 ttagtgagggaattttagagaaggaaaacgtgaaatccttctctaattccgtcactaaattttgcg 29998633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 43408618 - 43408510
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  | ||||| ||||  ||| |||||| || ||||||    
T  43408618 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttc 43408519  T
Q  203 tagtagtgt 211  Q
    |||||||||    
T  43408518 tagtagtgt 43408510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 32008980 - 32009090
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt---catcactcatttttctccctaattctg-ttttt 201  Q
    |||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||   | ||||| ||||| ||| |||||| || |||||    
T  32008980 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcatttttttccgtcactaattttcctcgctaattttgcttttt 32009079  T
Q  202 ctagtagtgtg 212  Q
    |||||||||||    
T  32009080 ctagtagtgtg 32009090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 46865243 - 46865338
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||| ||||| |||  | ||||||||||| ||||||| | ||||||||||||||| | |  |||||| |||||||||||||||||    
T  46865243 ttagtgagggaaattcagagagggagaacgtgaaatccctctctaattccattactaaattttgcggccaagaaatttgtgagggattttattttt 46865338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 20408299 - 20408160
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||||||||||||||||||| |   ||||| ||||| |||| ||||||  |     
T  20408299 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgttactaaattttgcgaccatggaatttgtgaggaatttcattttttccg 20408200  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||| ||| |||||| || ||||||||||||||    
T  20408199 tcactaattttcctcgctaattttgctttttctagtagtg 20408160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 18895009 - 18894899
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat--ttttcatcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||||||| ||||||||||||||| | | ||| | ||||| |||||||  ||||| ||||| ||||| ||| |||||| || ||||    
T  18895009 tgaaatccctctctaatttcgtcactaaattttgcgaccaaagaatatgtgaggtattttatttttttcgtcactaattttcctcgctaattttgctttt 18894910  T
Q  201 tctagtagtgt 211  Q
     ||||||||||    
T  18894909 cctagtagtgt 18894899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 20580909 - 20580976
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    |||||||||||| |||||||| |||  | ||||||||||| ||||||||||| | |||||||||||||    
T  20580909 ttagtgagagaattttagagagggaaaacgtgaaatccctctctaatttcgtaattaaattttgcgac 20580976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 52183678 - 52183773
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||||||||||    
T  52183678 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaattttattttt 52183773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 18890659 - 18890593
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| ||||||||||||||||||| |  |||||| ||||| |||| ||||||    
T  18890659 gtgaaatccctctctaattccgttactaaattttgcgaccattaaatttgtgaggaatttcattttt 18890593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 13308929 - 13308864
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||||| | ||||||||||||||| |  |||||| ||||| |||||||||||    
T  13308929 tgaaatccctctctaatttcatcactaaattttgcgaccaataaatttgtgaggaattttattttt 13308864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 38531309 - 38531169
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| |||||||||||| |||  | |||||||| || ||||||| | | ||||||||||||||| |   ||||| ||||| |||||||||||  |     
T  38531309 ttagtgagggaaatttagagagggaaaacgtgaaatctctctctaattccatcactaaattttgcgactaaggaatttgtgaggaattttattttttccg 38531210  T
Q  172 tcactcatttttctccctaattct-gtttttctagtagtgt 211  Q
    ||||| ||||  |||||||||| |  |||||||||||||||    
T  38531209 tcacttatttccctccctaattttactttttctagtagtgt 38531169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 29549418 - 29549557
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggatttta--tttttca 171  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||| ||||| | ||||||| ||||  ||||||  ||||||     
T  29549418 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaatttcgcgactaaaaaatttgtgagaaattttatttttttcg 29549517  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  29549518 tcactaatttccctcgctaattttgctttttctagtagtg 29549557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 41120844 - 41120729
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  ||||||| ||||  ||| |||||| || ||||||    
T  41120844 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttc 41120745  T
Q  203 tagtagtgtgtatata 218  Q
    || |||||| ||||||    
T  41120744 tattagtgtatatata 41120729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 11917786 - 11917853
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    ||||||||| || |||||||| |||  | ||||| ||||||||||||| ||| |||||||||||||||    
T  11917786 ttagtgagataagtttagagagggaaaacgtgaactccctttctaattccgtcactaaattttgcgac 11917853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 12161814 - 12161909
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  12161814 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 12161909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 13523100 - 13523033
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    |||||||| ||| |||||||| |||  | ||||||||||| ||||||| ||| |||||||||||||||    
T  13523100 ttagtgagggaattttagagagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgac 13523033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 16913716 - 16913621
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||||||||| |||  |  |||||||||| ||||||| ||||| |||||||| |||| |   ||||| ||||| |||||||||||    
T  16913716 ttagtgagggaaatttagagagggaaaacatgaaatccctctctaattccgttattaaattttacgactaaggaatttgtgaggaattttattttt 16913621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 22158802 - 22158897
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  22158802 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 22158897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 23457897 - 23457992
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  23457897 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 23457992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 9110084 - 9109975
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||  | ||||| ||||  ||| |||||| || ||||    
T  9110084 tgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttt 9109985  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  9109984 tctagtagtg 9109975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 12720839 - 12720948
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||||||||||  | ||||| ||||  ||| |||||| || ||||    
T  12720839 tgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattttattttttccgtcactaatttccctcgctaattttgctttt 12720938  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  12720939 tctagtagtg 12720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 15243085 - 15243151
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcga 140  Q
    |||||||| ||||||||| || |||  | ||||||||||| ||||||| ||| ||||||||||||||    
T  15243085 ttagtgagggaaatttagtgagggaaaacgtgaaatccctatctaattccgtcactaaattttgcga 15243151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 18787998 - 18787956
Alignment:
Q  127 actaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||||||| | |||||||| ||||||||||||||||    
T  18787998 actaaattttgcgaccaaaaaatttaggagggattttattttt 18787956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 41071974 - 41071880
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttatttt 168  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| |||||    
T  41071974 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcatttt 41071880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 12174875 - 12174810
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| | ||||||| ||| |||||||||||||||||   ||||| ||||| |||||||||||    
T  12174875 tgaaatccttctctaattccgtcactaaattttgcgacgaaggaatttgtgaggaattttattttt 12174810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 46790032 - 46790140
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||||||||||| ||| | ||||||||||||| | | ||||| ||||| |||| ||||||  | ||||| ||||  ||| |||||| || ||||||    
T  46790032 aaatccctttctaattccgtcattaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 46790131  T
Q  203 tagtagtgt 211  Q
    |||||||||    
T  46790132 tagtagtgt 46790140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 25788105 - 25787998
Alignment:
Q  105 gaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-ttttt 201  Q
    ||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| ||||| |||||  | ||||| ||||| ||| |||||| || |||||    
T  25788105 gaaatccctctctaattccgtcactaaattttgcgaccatggaatttgtgaggaattttcttttttccgtcactaattttcctcgctaattttgcttttt 25788006  T
Q  202 ctagtagt 209  Q
    ||||||||    
T  25788005 ctagtagt 25787998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 50845439 - 50845324
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggatttta--tttttcatcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| ||||||  |||| | ||||  ||||  |||||||||| || ||||    
T  50845439 tgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattttatgttttccgtcacaaatttccctccctaattttgctttt 50845340  T
Q  201 tctagtagtgtgtata 216  Q
    ||||||||||| ||||    
T  50845339 tctagtagtgtctata 50845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 23281815 - 23281881
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| ||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||||||    
T  23281815 gtgaaatccctctctaattccgtcactaaattttgcgaccataaaatttgtgaggaattttattttt 23281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 33547576 - 33547641
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| |||||||| || ||||||||||||||| | | ||||| |||||||||||||||||    
T  33547576 tgaaatccctatctaattttgtcactaaattttgcgaccaaagaatttgtgagggattttattttt 33547641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 21691635 - 21691540
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||| |||||||| | |  | ||||||||||| ||||||||||| ||||||||||||||| | | ||||| ||||  |||||||||||    
T  21691635 ttagtgagggaattttagagaggaaaaacgtgaaatccctctctaatttcgtcactaaattttgcgaccaaagaatttgtgagaaattttattttt 21691540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 28364911 - 28365051
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||  |     
T  28364911 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccg 28365010  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  28365011 tcactaatttccctcgctaattttgctttttctagtagtgt 28365051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 9892963 - 9893102
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  |     
T  9892963 ttagtgagggaaatttagtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccg 9893062  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  9893063 tcactaatttccctcgctaattttgctttttctagtagtg 9893102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 5360441 - 5360504
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||| || ||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||||||    
T  5360441 aaatctctctctaattccgtcactaaattttgcgaccaaaaaatttgtgaggaattttattttt 5360504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 12845003 - 12845098
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||  ||||||||||| |||  | |||||||| || ||||||| ||| ||||||||||||||| | | ||||| ||||  |||||||||||    
T  12845003 ttagtgaggaaaatttagagagggaaaacgtgaaatctctctctaattccgtcactaaattttgcgaccaaagaatttgtgagcaattttattttt 12845098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 20692918 - 20692855
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||||||| ||||||||||||||| | |||| |||| | | |||||||||||    
T  20692918 aaatccctctctaatttcgtcactaaattttgcgaccaaaaaacttataaagaattttattttt 20692855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 22579488 - 22579393
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||    
T  22579488 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatagaatttgtgaggaatttcattttt 22579393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 26939587 - 26939682
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| |||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  26939587 ttagtgagagatatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttt 26939682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 2992645 - 2992754
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||||||||||  ||||||| ||||  ||| |||||| || ||||    
T  2992645 tgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaattttattttttccatcactaatttccctcgctaattatgctttt 2992744  T
Q  201 tctagtagtg 210  Q
     |||||||||    
T  2992745 cctagtagtg 2992754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 9060143 - 9060185
Alignment:
Q  127 actaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||||||| | ||||||| |||||||||||||||||    
T  9060143 actaaattttgcgaccaaaaaatttgtgagggattttattttt 9060185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 1939351 - 1939286
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| | ||||||||||||| | ||||||| ||||| |||| ||||||    
T  1939351 tgaaatccctctctaattccgtcattaaattttgcgaccaaaaaatttgtgaggaatttcattttt 1939286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 14886593 - 14886700
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||| ||| |||||||||| |||| | | ||| | |||||||||||||||||    ||||| ||||| |||||||||| || ||||||    
T  14886593 aaatccctctctaattccgtcactaaattttacgaccaaagaatatgtgagggattttattttttctgtcactaattttcctccctaattttgctttttc 14886692  T
Q  203 tagtagtg 210  Q
    | ||||||    
T  14886693 tggtagtg 14886700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 37896 - 37831
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| | ||||||| ||||| |||||||||||    
T  37896 tgaaatccctctctaattccgtcactaaattttgcgaccataaaatttgtgaggaattttattttt 37831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 1907385 - 1907450
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||||||| ||||||||||||||| | | ||| | |||||||||||||||||    
T  1907385 tgaaatccctctctaatttcgtcactaaattttgcgaccaaagaatatgtgagggattttattttt 1907450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 816330 - 816235
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||  ||||||||||| |||  | ||||||||||| ||||||| ||| ||||||||||||||| | | ||||| |||| |||||| |||||    
T  816330 ttagtgaggaaaatttagagatggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgagagattttgttttt 816235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 23232069 - 23232178
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttt 200  Q
    |||||||||||||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||  | ||||| ||||  ||| |||||| || ||||    
T  23232069 tgaaatccctttctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttttccgtcactaatttccctctctaattttgctttt 23232168  T
Q  201 tctagtagtg 210  Q
    ||||||||||    
T  23232169 tctagtagtg 23232178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 25777247 - 25777157
Alignment:
Q  78 tgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttatttt 168  Q
    |||| |||||||||||| |||  | |||||||| || ||||||||| | |||||||||| |||  | ||||||| ||||||||||||||||    
T  25777247 tgagggaaatttagagagggaaaacgtgaaatcactctctaatttcatcactaaattttacgatcaaaaaatttgtgagggattttatttt 25777157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 210
Target Start/End: Original strand, 22486394 - 22486533
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||||| || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  |     
T  22486394 ttagtgagggaaatttagtgacggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccg 22486493  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||  ||| |||||| || ||||||||||||||    
T  22486494 tcactaatttccctcgctaattttgctttttctagtagtg 22486533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 10222768 - 10222630
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggatttta-tttttc-a 171  Q
    ||||||||| |||||||||||| ||  | || |||||||| |||||||  || | ||||||||||||  | ||||||||||||  |||||| ||||||      
T  10222768 ttagtgagaaaaatttagagaaagaaaacgtaaaatccctctctaattctgtcattaaattttgcgatca-aaaatttatgagaaattttactttttctg 10222670  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtg 210  Q
    ||||| ||||| |||||||||| || ||||||||||||||    
T  10222669 tcactaattttcctccctaattatgttttttctagtagtg 10222630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 11036507 - 11036602
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  11036507 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 11036602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 11890286 - 11890191
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||  |||||||| || |||  || ||| ||||||  |||| ||||| ||||||||||| ||| | | |||||||||||||||||||||||    
T  11890286 ttagtgaggaaaatttagtgagggaaaatatgatatccctcgctaacttcgtcactaaattttgagaccaaagaatttatgagggattttattttt 11890191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 20174020 - 20174115
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  20174020 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 20174115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 22501594 - 22501689
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| |||||||||||| |||  | ||||||||||| ||||||| ||| | ||||||||||| | | | ||||| |||  ||||||||||||    
T  22501594 ttagtgagggaaatttagagagggaaaacgtgaaatccctctctaattccgtcattaaattttgcggccaaagaatttgtgaaagattttattttt 22501689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 23577328 - 23577261
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgac 141  Q
    |||||||| ||||||||| || |||  | ||||||||||| ||||||| ||| |||||||||||||||    
T  23577328 ttagtgagggaaatttagtgagggaaaacgtgaaatccctatctaattccgtcactaaattttgcgac 23577261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 23699964 - 23699869
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||||||||| | || |||  ||||||||||||| | |||||  || ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  23699964 ttagtgagagaaattttgtgagggaaaatgtgaaatccctctttaattctgtcactaaattttgcgaccatgaaatttgtgaggaatttcattttt 23699869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 31425650 - 31425555
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||    
T  31425650 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccacagaatttgtgaggaatttcattttt 31425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 15014514 - 15014449
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||||||||||    
T  15014514 tgaaatccctctctaattccgtcactaaattttgcgactaaggaatttgtgaggaattttattttt 15014449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 28800908 - 28800973
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  28800908 tgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgaggaatttcattttt 28800973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 32267350 - 32267443
Alignment:
Q  77 gtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttatttttc 170  Q
    ||||| |||||||||||| |||  | |  |||||||| |||||||  || ||||||||||||||  |  |||||| ||||||||||||||||||    
T  32267350 gtgagggaaatttagagagggaaaacgcaaaatccctctctaattctgtcactaaattttgcgatcaagaaatttgtgagggattttatttttc 32267443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 37135424 - 37135284
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--ca 171  Q
    |||||||| ||||||| | || |||  | ||||||||||| ||||||| ||| |||||||||| |||| |   ||||||||||| |||| ||||||  |     
T  37135424 ttagtgagggaaattttgtgagggaaaacgtgaaatccctctctaattccgtcactaaattttacgaccatggaatttatgaggaatttcattttttccg 37135325  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagtgt 211  Q
    ||||| ||||  ||| |||||| || |||||||||||||||    
T  37135324 tcactaatttccctcactaattttgttttttctagtagtgt 37135284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 42926529 - 42926464
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||| ||||||    
T  42926529 tgaaatccctctctaattccgtcactaaattttgcgactaagaaatttgtgaggaatttcattttt 42926464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 47523759 - 47523694
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| | | ||||| ||||| |||| ||||||    
T  47523759 tgaaatccctctctaattccgtcactaaattttgcgaccaaagaatttgtgaggaatttcattttt 47523694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 18217861 - 18217968
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||||||| ||||||||||||||| |   ||||| ||||| |||| ||||||  | ||||| ||||  ||| |||||| || ||||||    
T  18217861 aaatccctctctaatttcgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttc 18217960  T
Q  203 tagtagtg 210  Q
    ||||||||    
T  18217961 tagtagtg 18217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 48933165 - 48933276
Alignment:
Q  103 gtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-ttt 199  Q
    ||||||| ||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||||||||||  | ||||| ||||| ||| |||||| || |||    
T  48933165 gtgaaattcctctctaattccgtcactaaattttgcgaccatggaatttgtgaggaattttattttttccgtcactaattttcctcgctaattttgcttt 48933264  T
Q  200 ttctagtagtgt 211  Q
    ||||| ||||||    
T  48933265 ttctaatagtgt 48933276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 7505 - 7643
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattt--tatttttca 171  Q
    |||||||| ||||||||| || |||  | || |||||||| ||||||| ||| ||||||||||||||| |  |||||||||||| ||||  |||||| |     
T  7505 ttagtgagggaaatttagtgagggaaaacgtaaaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaatttcatattttccg 7604  T
Q  172 tcactcatttttctccctaattctg-tttttctagtagt 209  Q
    ||||| ||||  ||| |||||| || |||||||||||||    
T  7605 tcactaatttccctcgctaattttgctttttctagtagt 7643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 74680 - 74589
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| |  |||||||||||| |||||||    
T  74680 ttagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaattttat 74589  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 219636 - 219731
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||||||| |||||| || |||  |  |||||||||| ||||||| ||||||||||||||||||  | ||||||| ||||| |||| ||||||    
T  219636 ttagtgagagatatttagtgagggaaaacatgaaatccctctctaattccgttactaaattttgcgattaaaaaatttgtgaggaatttcattttt 219731  T

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Target: scaffold0717 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 1028 - 963
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| ||||||| ||| ||||||||||||||| |   ||||||||||| |||||||||||    
T  1028 tgaaatccctctctaattccgtcactaaattttgcgaccaaggaatttatgaggaattttattttt 963  T

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Target: scaffold0284 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 1628 - 1563
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||| |||| |||||||  |||||||||||||||||| |   |||||||||||||||||||||||    
T  1628 tgaaacccctctctaattatgttactaaattttgcgaccaaggaatttatgagggattttattttt 1563  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 121124 - 121031
Alignment:
Q  76 agtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||| ||| |||||||| |||  | ||||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||  |||||||||||    
T  121124 agtgagggaattttagagagggaaaacgtgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttgtgagaaattttattttt 121031  T

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Target: scaffold0240 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 15097 - 15034
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| ||| ||||||||||||||| |  |||||||||||| |||| ||||||    
T  15097 aaatccctctctaattccgtcactaaattttgcgaccaagaaatttatgaggaatttcattttt 15034  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 58582 - 58673
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttat 165  Q
    |||||||| ||||||||| || |||  |  |||||||||| ||||||| ||| ||||||||||||||| |  |||||| ||||| |||||||    
T  58582 ttagtgagggaaatttagtgagggaaaacatgaaatccctctctaattccgtcactaaattttgcgaccaagaaatttttgaggaattttat 58673  T

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Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 169
Target Start/End: Original strand, 84303 - 84398
Alignment:
Q  74 ttagtgagagaaatttagagaaggatgatgtgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||| ||||||| | || |||  ||||||||||||| ||||||| ||| ||||||||||| ||| |  |||||| ||||| |||| ||||||    
T  84303 ttagtgagggaaattttgtgagggaaaatgtgaaatccctctctaattccgtcactaaattttgtgaccatgaaatttgtgaggaatttcattttt 84398  T

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Target: scaffold0108 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 12685 - 12747
Alignment:
Q  107 aatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    ||||||| ||||||| ||| ||||||||||||||| | | ||||||||||| |||| ||||||    
T  12685 aatccctctctaattccgtcactaaattttgcgaccatagaatttatgaggaatttcattttt 12747  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 19247 - 19182
Alignment:
Q  104 tgaaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt 169  Q
    |||||||||| |||||||  ||| |||||||||||||| |  ||| ||||||| ||||||||||||    
T  19247 tgaaatccctctctaattatgtttctaaattttgcgaccaagaaaattatgagagattttattttt 19182  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 3774 - 3882
Alignment:
Q  106 aaatccctttctaatttcgttactaaattttgcgacgagaaaatttatgagggattttattttt--catcactcatttttctccctaattctg-tttttc 202  Q
    |||||||| ||||||| ||| ||||||||||||||| |   ||||| ||||| |||| ||||||  | ||||| ||||| ||| |||||| || ||||||    
T  3774 aaatccctctctaattccgtcactaaattttgcgaccaaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttc 3873  T
Q  203 tagtagtgt 211  Q
    |||||||||    
T  3874 tagtagtgt 3882  T

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