View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_52 (Length: 247)

Name: NF3018_low_52
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_52
NF3018_low_52
[»] chr8 (14 HSPs)
chr8 (45-145)||(6345305-6345404)
chr8 (45-145)||(31127258-31127357)
chr8 (45-145)||(37948942-37949041)
chr8 (55-145)||(43620056-43620145)
chr8 (55-145)||(26721175-26721264)
chr8 (55-128)||(1265121-1265194)
chr8 (60-145)||(26721290-26721374)
chr8 (55-145)||(13470864-13470953)
chr8 (54-145)||(32906903-32906993)
chr8 (45-145)||(3106183-3106282)
chr8 (54-145)||(4602596-4602686)
chr8 (54-129)||(4267360-4267435)
chr8 (80-145)||(42200110-42200174)
chr8 (52-95)||(40619725-40619768)
[»] chr7 (9 HSPs)
chr7 (45-145)||(27392591-27392690)
chr7 (55-145)||(1575843-1575932)
chr7 (45-131)||(28694701-28694787)
chr7 (59-145)||(36482646-36482731)
chr7 (60-145)||(323627-323711)
chr7 (49-129)||(31280183-31280263)
chr7 (59-129)||(36582534-36582604)
chr7 (55-145)||(6714228-6714317)
chr7 (87-145)||(10286414-10286471)
[»] chr5 (8 HSPs)
chr5 (55-145)||(40987340-40987429)
chr5 (45-145)||(13521491-13521590)
chr5 (49-129)||(41061218-41061298)
chr5 (55-145)||(13554768-13554857)
chr5 (49-145)||(27110655-27110750)
chr5 (62-145)||(1495912-1495994)
chr5 (54-145)||(33160518-33160608)
chr5 (49-129)||(42716129-42716209)
[»] chr4 (14 HSPs)
chr4 (55-145)||(24575174-24575263)
chr4 (55-145)||(9279925-9280014)
chr4 (46-145)||(46251931-46252029)
chr4 (54-145)||(47498856-47498946)
chr4 (55-128)||(7700297-7700370)
chr4 (54-129)||(42414565-42414640)
chr4 (67-145)||(18780958-18781035)
chr4 (49-129)||(34276963-34277043)
chr4 (54-129)||(3756978-3757053)
chr4 (45-128)||(40436458-40436541)
chr4 (54-129)||(42430004-42430079)
chr4 (80-145)||(47997031-47997095)
chr4 (52-95)||(24859057-24859100)
chr4 (66-128)||(6184090-6184152)
[»] chr6 (6 HSPs)
chr6 (55-145)||(7608299-7608388)
chr6 (45-145)||(16705364-16705456)
chr6 (55-145)||(21946710-21946799)
chr6 (46-129)||(10484386-10484472)
chr6 (54-145)||(3901150-3901240)
chr6 (45-125)||(10386171-10386249)
[»] chr1 (7 HSPs)
chr1 (59-145)||(14461716-14461801)
chr1 (45-145)||(5559393-5559492)
chr1 (65-131)||(24063941-24064007)
chr1 (54-145)||(41074903-41074993)
chr1 (54-145)||(41198523-41198613)
chr1 (52-95)||(11956332-11956375)
chr1 (54-145)||(24614743-24614833)
[»] chr3 (7 HSPs)
chr3 (55-128)||(37282664-37282737)
chr3 (55-128)||(19636565-19636638)
chr3 (60-145)||(32055893-32055977)
chr3 (54-145)||(25706301-25706392)
chr3 (54-129)||(1030476-1030551)
chr3 (60-128)||(39717244-39717312)
chr3 (46-131)||(48085305-48085390)
[»] chr2 (5 HSPs)
chr2 (55-145)||(16672012-16672102)
chr2 (49-129)||(21352321-21352401)
chr2 (87-145)||(18511557-18511614)
chr2 (60-120)||(22596099-22596159)
chr2 (60-116)||(34439868-34439924)
[»] scaffold0034 (1 HSPs)
scaffold0034 (45-145)||(47763-47862)
[»] scaffold0396 (1 HSPs)
scaffold0396 (62-128)||(1290-1356)
[»] scaffold0140 (1 HSPs)
scaffold0140 (45-129)||(15505-15589)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 6345404 - 6345305
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  6345404 ttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatat 6345306  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 31127258 - 31127357
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  31127258 ttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatat 31127356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 37948942 - 37949041
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  37948942 ttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatat 37949040  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 43620056 - 43620145
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  43620056 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaaca-catccaaaaatatt 43620145  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 26721175 - 26721264
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  26721175 ggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 26721264  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 1265194 - 1265121
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1265194 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 1265121  T

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Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 26721290 - 26721374
Alignment:
Q  60 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  26721290 ggttcggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaaca-catccaaaaatatt 26721374  T

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Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 13470953 - 13470864
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||| |||||||||||||||| |||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||    
T  13470953 ggtttggttcggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaaca-catccaaaaatatt 13470864  T

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Target: chr8; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 32906993 - 32906903
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  32906993 cggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 32906903  T

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Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 3106282 - 3106183
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    |||||||||||||||||||||||||||| || |  |||| ||||||||| ||||| |||| |||||| |||||||| ||||||||  |||||||||||||    
T  3106282 ttacttttgcggttcggttcggttttgagaaagtgatccaaaatccgatacgatcctagcagtttttacaaaacaacatccaaac-gcatccaaaaatat 3106184  T

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Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 4602686 - 4602596
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| | ||||||||||||    
T  4602686 cggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-cgtccaaaaatatt 4602596  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 4267435 - 4267360
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||| || ||||||||    
T  4267435 cggtttggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaac 4267360  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 42200110 - 42200174
Alignment:
Q  80 atccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||||||| ||||||||||||| ||||||||  ||||||| ||||||||| |||| |||||||||    
T  42200110 atccgaaattcgatccgatcataacggtttttataaaacaacatccaaaca-catctaaaaatatt 42200174  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 40619725 - 40619768
Alignment:
Q  52 tgcggttcggttcggttttgaaaacgcaatccgaaatccgatcc 95  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  40619725 tgcggttcggttcggttttgaaaaatcaatccaaaatccgatcc 40619768  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 27392690 - 27392591
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  27392690 ttacttttgcggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacatccaaaca-catccaaaaatat 27392592  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 1575932 - 1575843
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  1575932 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 1575843  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 28694787 - 28694701
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacac 131  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  28694787 ttactattgcggttcggtttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatccaaacac 28694701  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 36482646 - 36482731
Alignment:
Q  59 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||  |||||||||| ||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||    
T  36482646 cggttcggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacatccaaaca-catccaaaaatatt 36482731  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 323627 - 323711
Alignment:
Q  60 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  323627 ggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 323711  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 31280183 - 31280263
Alignment:
Q  49 ttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||||||||||||||||||||||||| |  |||| ||||||||||||||| || || ||||| |||||||| ||||||||    
T  31280183 ttttgcggttcggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatccaaac 31280263  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 36582534 - 36582604
Alignment:
Q  59 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||||||||||||||| |  ||||||||||||||| |||| ||||||||||| |||||||| ||||||||    
T  36582534 cggttcggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaac 36582604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 6714228 - 6714317
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||| ||||||| || |  || ||||||||||||||||| ||||||||||| ||||| || ||||||||| |||||||| |||||    
T  6714228 ggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaaca-catccaaatatatt 6714317  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 10286471 - 10286414
Alignment:
Q  87 atccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||| || || ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  10286471 atccgaaccaattatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 10286414  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 40987429 - 40987340
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  40987429 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 40987340  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 13521590 - 13521491
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||   ||||||||||| ||||||||||| ||| ||||| |||||||||||||    
T  13521590 ttacttttgcggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacatctaaaca-catccaaaaatat 13521492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 41061298 - 41061218
Alignment:
Q  49 ttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||||| ||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||||| |||||||||||||||||    
T  41061298 ttttgcgtttcggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaac 41061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 13554857 - 13554768
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||| |||||||||||||||| ||||| ||||||||||||  || ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  13554857 ggtttggttcggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaaca-catctaaaaatatt 13554768  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 145
Target Start/End: Complemental strand, 27110750 - 27110655
Alignment:
Q  49 ttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||||||||||||||||||||| ||| |  ||||  |||||||||||||| ||||||||||| |||||||| ||||||||| |||||||| |||||    
T  27110750 ttttgcggttcggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatccaaaca-catccaaatatatt 27110655  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 1495912 - 1495994
Alignment:
Q  62 ttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||| |  |||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||    
T  1495912 ttcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaaca-catccaaatatatt 1495994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 33160608 - 33160518
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||| |||||| ||||||||| |  ||||||||||||| | ||||||| | |||||||||||||||  |||||||| ||||||||||||||    
T  33160608 cggtttggttcgattttgaaaaggtgatccgaaatccgaactgatcataacagtttttccaaaacaacctccaaaca-catccaaaaatatt 33160518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 42716129 - 42716209
Alignment:
Q  49 ttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    |||||||||| ||||| |||||||||| | |||||||||||  |  ||||| ||||  ||||| |||||||| ||||||||    
T  42716129 ttttgcggtttggttcagttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaac 42716209  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 24575174 - 24575263
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  24575174 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 24575263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 9280014 - 9279925
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  9280014 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-aatccaaaaatatt 9279925  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 46251931 - 46252029
Alignment:
Q  46 tacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| || |||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  46251931 tacttttgcggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacatccaaaca-catccaaaaatatt 46252029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 47498856 - 47498946
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||||||||||||||| |||| |  ||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  47498856 cggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 47498946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 7700370 - 7700297
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||    
T  7700370 ggttcggttcagttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttctaaaacaacatccaaa 7700297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 42414565 - 42414640
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  42414565 cggtttggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaac 42414640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 18780958 - 18781035
Alignment:
Q  67 ttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||||||||| ||| ||||||| |||| ||||||| ||||||||||||||||| || |||||| ||||||||||||||    
T  18780958 ttttgaaaacgtaattcgaaatctgatctgatcataacggtttttccaaaacaaaattcaaaca-catccaaaaatatt 18781035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 34277043 - 34276963
Alignment:
Q  49 ttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||||||||||||||| ||||||||| |  ||||  ||| |||||||||| ||||||||||| |||||||| ||||||||    
T  34277043 ttttgcggttcggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatccaaac 34276963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 3757053 - 3756978
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||| |||||||||||||||| |  |||||||||||||||||||| || ||||||||  ||||||| || |||||    
T  3757053 cggtttggttcggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaac 3756978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 40436541 - 40436458
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    ||||||||||||||||||| ||||||||||| |  ||||||| ||||||| |||| || |  ||||| |||||||| |||||||    
T  40436541 ttacttttgcggttcggtttggttttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatccaaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 42430079 - 42430004
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||| |||| ||||||||||| |  ||||||||| ||||||||||  |||||||||| |||||||| ||||||||    
T  42430079 cggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaacatccaaac 42430004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 47997031 - 47997095
Alignment:
Q  80 atccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||| ||||||||||| |||||||| || ||| || |||| |||||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagca-catcgaaaaatatt 47997095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 24859100 - 24859057
Alignment:
Q  52 tgcggttcggttcggttttgaaaacgcaatccgaaatccgatcc 95  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  24859100 tgcggttcggttcggttttgaaaaatcaatccaaaatccgatcc 24859057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 6184090 - 6184152
Alignment:
Q  66 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    |||||||||| |  |||||||||||||||||||| || || ||||| |||||||| |||||||    
T  6184090 gttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 7608299 - 7608388
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||    
T  7608299 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-aatccaaaaatatt 7608388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 16705364 - 16705456
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  16705364 ttacttttgcggttcggttcggttttgaaaacgcaatc-------cgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatat 16705455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 21946799 - 21946710
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||| ||||||||||||||||    ||||||||||||| || || ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  21946799 ggtttggttcggttttgaaaagctgatccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaaca-catcaaaaaatatt 21946710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 10484386 - 10484472
Alignment:
Q  46 tacttttgcggttcggttcgg---ttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    |||||||||||||| ||||||   |||||| || |||||||||||||| ||||||||||||||||||||  || |||| ||||||||    
T  10484386 tacttttgcggttcagttcggcagttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaac 10484472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 3901150 - 3901240
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||||||||||||||| |||| |  ||||||| ||| ||| |||| | ||||||||  |||||||| ||||||||| ||||||||||||||    
T  3901150 cggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaacatccaaaca-catccaaaaatatt 3901240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 10386249 - 10386171
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatcc 125  Q
    |||||||||||||| || ||||||||||||| |  ||||||||||||||  |||| ||||||||||| |||||||| ||||    
T  10386249 ttacttttgcggtt-ggatcggttttgaaaa-gtgatccgaaatccgatatgatcctagcggtttttacaaaacaacatcc 10386171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 14461801 - 14461716
Alignment:
Q  59 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14461801 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaaca-catccaaaaatatt 14461716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 5559492 - 5559393
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  5559492 ttacttttgcggttcggtttggttttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacatccaaaca-catccaaaaatat 5559394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 24063941 - 24064007
Alignment:
Q  65 ggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacac 131  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  24063941 ggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacac 24064007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 41074993 - 41074903
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||| ||||||||| | |  ||||||||| | ||| || ||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  41074993 cggttcggtttggttttgaagaggtgatccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaaca-catccaaaaatatt 41074903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 41198523 - 41198613
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||| ||||| |||||| ||| |  |||||||||||||||||||| ||||||||||| |||||||| |||||| || |||||||| |||||    
T  41198523 cggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagcggtttttacaaaacaacatccaatca-catccaaatatatt 41198613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 11956332 - 11956375
Alignment:
Q  52 tgcggttcggttcggttttgaaaacgcaatccgaaatccgatcc 95  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  11956332 tgcggttcggttcggttttgaaaaatcaatccaaaatccgatcc 11956375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 24614833 - 24614743
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||| ||||||||||| |||| |  |||| ||||| ||||||||| ||||||||||| |||||| | ||||||| | |||||||| |||||    
T  24614833 cggtttggttcggttttaaaaaagtgatccaaaatctgatccgatcttagcggtttttacaaaacgacatccaaa-agcatccaaatatatt 24614743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 37282664 - 37282737
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37282664 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 37282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 19636565 - 19636638
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||| |||||||    
T  19636565 ggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttccaaaacaacatccaaa 19636638  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 32055893 - 32055977
Alignment:
Q  60 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  32055893 ggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 32055977  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 25706392 - 25706301
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggt-ttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    ||||| |||||||||||||||| |  ||| ||| ||||| |||||||||||||| |||| |||||||| ||||||||| ||||||||||||||    
T  25706392 cggtttggttcggttttgaaaaggttatctgaagtccgaaccgatcatagcggtttttttcaaaacaacatccaaaca-catccaaaaatatt 25706301  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 1030551 - 1030476
Alignment:
Q  54 cggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    ||||| |||||||||| ||||| |  |||| ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  1030551 cggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaac 1030476  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 39717244 - 39717312
Alignment:
Q  60 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    ||||||||||| |||| |  |||| |||||||| |||||||||||||||||||||| |||| |||||||    
T  39717244 ggttcggttttcaaaaggtgatccaaaatccgaaccgatcatagcggtttttccaatacaacatccaaa 39717312  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 48085305 - 48085390
Alignment:
Q  46 tacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacac 131  Q
    ||||||||||||| |||||||||||||||| |  ||||||||||||||  |||   | || ||||| |||||||| ||||||||||    
T  48085305 tacttttgcggtttggttcggttttgaaaaagtgatccgaaatccgatttgataccatcgctttttacaaaacaacatccaaacac 48085390  T

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Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 16672102 - 16672012
Alignment:
Q  55 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaa-acaccatccaaaaatatt 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||    
T  16672102 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttccaaaacaacatccaacaca-catccaaaaatatt 16672012  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 21352321 - 21352401
Alignment:
Q  49 ttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    |||||||| ||||| |||||||||||| |  |||| ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  21352321 ttttgcggctcggtacggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaac 21352401  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 18511614 - 18511557
Alignment:
Q  87 atccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatatt 145  Q
    |||||| || || ||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  18511614 atccgaaccaattatagcggttttgccaaaacaacatccaaaca-catccaaaaatatt 18511557  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 22596159 - 22596099
Alignment:
Q  60 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaa 120  Q
    |||| ||||||||||| |  ||||||||||||||| |||| ||||| ||||| ||||||||    
T  22596159 ggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaa 22596099  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34439924 - 34439868
Alignment:
Q  60 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaa 116  Q
    |||||||||||||||| | |||||| |||||||||| ||  ||||||||||| ||||    
T  34439924 ggttcggttttgaaaaagtaatccggaatccgatccaattctagcggtttttacaaa 34439868  T

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Target: scaffold0034 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 47763 - 47862
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaacaccatccaaaaatat 144  Q
    ||||||||||| || | ||||||||||| || |  ||||||||||||||| |||||||||| ||||| |||||||| ||||||||| |||||| ||||||    
T  47763 ttacttttgcgatttgattcggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaaca-catccacaaatat 47861  T

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Target: scaffold0396 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 1290 - 1356
Alignment:
Q  62 ttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaa 128  Q
    |||| ||||||||| |  |||||||||||||| ||||| ||||||| ||| ||||||||||||||||    
T  1290 ttcgattttgaaaaagtgatccgaaatccgattcgatcttagcggtgtttacaaaacaatatccaaa 1356  T

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Target: scaffold0140 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 15589 - 15505
Alignment:
Q  45 ttacttttgcggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaatatccaaac 129  Q
    |||||||| |||| ||||| ||||||||||| |  ||||||||||  |||||||| ||||  ||||| |||||||| | ||||||    
T  15589 ttacttttacggtccggtttggttttgaaaaagttatccgaaatctaatccgatcctagctatttttacaaaacaacaaccaaac 15505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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