View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_55 (Length: 241)
Name: NF3018_low_55
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_55 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 53561579 - 53561802
Alignment:
| Q |
19 |
ttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaagagggttttattggggactgtcgg |
118 |
Q |
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| T |
53561579 |
ttggaatgacgtgtggaggggtaatagttcttttccggctaaatatccaagattgttctccttgtctaaccaaaaagagggttttattggggactgtcgg |
53561678 |
T |
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| Q |
119 |
gtgagtggcagggtgggaggtaattgggattttagttggagaagggatc-ttttgtgtgggaggaggatcttgttgatgcaatgttggaggatttgaatg |
217 |
Q |
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| T |
53561679 |
gtgagtggcggggtgggaggtaattgggattttagttggagaagggatctttttgtgtgggaggaggatcttgttgatgcaatgttggaggatttgaatg |
53561778 |
T |
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| Q |
218 |
gttttgtgttttcggatgttgaag |
241 |
Q |
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| T |
53561779 |
gttttgtgttttcggatgttgaag |
53561802 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 22154361 - 22154312
Alignment:
| Q |
59 |
aaatatccaagattgttctccttgtctaaccaaaaagagggttttattgg |
108 |
Q |
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| T |
22154361 |
aaatatccaagattgttctccttgtctaatcagaaagaggcttttattgg |
22154312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 22210276 - 22210227
Alignment:
| Q |
59 |
aaatatccaagattgttctccttgtctaaccaaaaagagggttttattgg |
108 |
Q |
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| T |
22210276 |
aaatatccaagattgttctccttgtctaatcagaaagaggcttttattgg |
22210227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 4903175 - 4903223
Alignment:
| Q |
59 |
aaatatccaagattgttctccttgtctaaccaaaaagagggttttattg |
107 |
Q |
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| T |
4903175 |
aaatatccaagattgttctccttgtctaatcagaaagaggcttttattg |
4903223 |
T |
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