View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_57 (Length: 239)
Name: NF3018_low_57
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 34689197 - 34688980
Alignment:
| Q |
19 |
aagtgtcgtcaatgcactatctaacacactttccaacacactattattcagggaaatactatatcacagatgttaagcagagggattgccaaaaacaaag |
118 |
Q |
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| T |
34689197 |
aagtgtcatcaatgcactatctaaaactctttccaacatagtattattcagg-aaatactatatcacagatgttaggcagaaggattgccaaaaacacag |
34689099 |
T |
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| Q |
119 |
ttcagattacatgcaagatcctgttcagttcaccgttcagcataaagaattcaataaaatgcattttcttatactaaaacaattgaaaattaatcatgaa |
218 |
Q |
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| T |
34689098 |
ttcagattacacgcacgatcctcttcagtgtgtcgttcagcataaagaattcaataaaatacattttcttatgtcaaaacaattgaaaactaatcatgaa |
34688999 |
T |
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| Q |
219 |
atgctatcagcctatcaca |
237 |
Q |
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| T |
34688998 |
atgctatcagcctatcaca |
34688980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 34749198 - 34749140
Alignment:
| Q |
19 |
aagtgtcgtcaatgcactatctaacacactttccaacacactattattcagggaaatac |
77 |
Q |
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||||||| |||| ||||| |||||| | |||||||||||| |||||||||| ||||||| |
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| T |
34749198 |
aagtgtcatcaacgcactttctaactctctttccaacacattattattcagtgaaatac |
34749140 |
T |
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