View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_6 (Length: 557)
Name: NF3018_low_6
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 139 - 542
Target Start/End: Original strand, 45394647 - 45395050
Alignment:
| Q |
139 |
gaggagaaagttggagtgaatcaccgatctatatcttgaatggtagggtcaagcaatttatttatctgaaatatgaaattaaatatacttaattgctatt |
238 |
Q |
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| T |
45394647 |
gaggagaaagtttgagtgaatcaccgatctatatcttgaatggtagggtcaagcaatttatttatctgaaatatgaaattaaatatacttaattgctatt |
45394746 |
T |
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| Q |
239 |
gttcttctgaataatttggagaacgattgattgacataataaaaatgacaaatatgattgaggttttcaattcgactaattatcatcttataattttgtt |
338 |
Q |
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| T |
45394747 |
gttcttctgaataatttggagaacgattgattgacataataaaaatgacaaatataattgaggttttcaattcgactaattatcatcttataattttgtt |
45394846 |
T |
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| Q |
339 |
actttgagataccaaattgttatatatgcctacaatatgaaaaactaaaacggtgattttactcaattttgtattagaacccatccatgcacaatcatat |
438 |
Q |
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| T |
45394847 |
actttgagataccaaattgttatatatgcctacaatatgaaaaactaaaacggtgattttactcaattttgtattagaacccatccatgcacaatcatat |
45394946 |
T |
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| Q |
439 |
tctctatcatagttcatttcaaagnnnnnnnnnnnnnnnnnnncacatatggttacataataggttgtttaaatcattgagttgtactaactctattggt |
538 |
Q |
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| T |
45394947 |
tctctatcatagttcatttcaaagaaaaaacaaaacaaaaaaacacatatggttacataacaggttgtttaaatcattgagttgtactaactctattggt |
45395046 |
T |
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| Q |
539 |
attg |
542 |
Q |
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| T |
45395047 |
attg |
45395050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 45394521 - 45394594
Alignment:
| Q |
13 |
aatatccgtttatttcaagtaaatggagatgattttttcccacaattaggagagcacatattagggggaccggt |
86 |
Q |
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| T |
45394521 |
aatatccatttatttcaagtaaatggagatgattttttcccacaattaggagagcacatattagggggaccggt |
45394594 |
T |
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