View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_61 (Length: 229)
Name: NF3018_low_61
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_61 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6557159 - 6556931
Alignment:
| Q |
1 |
agttctttttaatcataaccatgtgctttgatacaaaacacaataccacatggacaatttggatactcttcttctaatgtggttttaatttatgatggtt |
100 |
Q |
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| T |
6557159 |
agttctttttaatcataaccatgtgctttgatacaaaacacaataccacatggacaatttggatactcttcttctaatgtggttttaatttatgatggtt |
6557060 |
T |
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| Q |
101 |
gaatacttatccttgaacaactacaaaatattcaaccatttcatatatattaaggtttgattgtgatcttggttcctttgtattggacatgcgattttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6557059 |
gaatacttatccttgaacaactacaaaatattcaaccatttcatatatattaaggtttgattgtgatcttggttcctttgtattggacatgcgattttgg |
6556960 |
T |
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| Q |
201 |
ttccacgacatttttctgcaaattagttt |
229 |
Q |
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||||||||||||||||||| ||||||||| |
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| T |
6556959 |
ttccacgacatttttctgccaattagttt |
6556931 |
T |
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