View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_62 (Length: 223)

Name: NF3018_low_62
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_62
NF3018_low_62
[»] scaffold1768 (1 HSPs)
scaffold1768 (18-204)||(54-239)
[»] chr2 (27 HSPs)
chr2 (18-204)||(4412936-4413121)
chr2 (18-203)||(23484809-23484993)
chr2 (18-204)||(41867778-41867963)
chr2 (18-183)||(9685306-9685470)
chr2 (18-204)||(17344690-17344875)
chr2 (18-202)||(18744826-18745009)
chr2 (18-204)||(19161653-19161838)
chr2 (58-200)||(20142614-20142755)
chr2 (18-204)||(28225052-28225237)
chr2 (18-183)||(5532471-5532635)
chr2 (36-176)||(44686490-44686628)
chr2 (23-204)||(27502419-27502598)
chr2 (58-204)||(3825819-3825964)
chr2 (127-206)||(9675004-9675083)
chr2 (134-203)||(10579650-10579719)
chr2 (127-186)||(7760734-7760793)
chr2 (127-205)||(13147003-13147081)
chr2 (19-77)||(2888569-2888627)
chr2 (18-67)||(29808127-29808175)
chr2 (127-191)||(29808232-29808296)
chr2 (18-66)||(34814826-34814874)
chr2 (125-183)||(33612438-33612496)
chr2 (17-46)||(20142752-20142781)
chr2 (17-85)||(1296038-1296106)
chr2 (18-78)||(5679330-5679390)
chr2 (119-203)||(16351710-16351793)
chr2 (22-70)||(44720379-44720427)
[»] chr7 (27 HSPs)
chr7 (24-204)||(4501316-4501495)
chr7 (18-204)||(19277345-19277530)
chr7 (18-204)||(45613712-45613897)
chr7 (18-205)||(3676691-3676878)
chr7 (18-201)||(983001-983183)
chr7 (18-203)||(21326709-21326893)
chr7 (18-203)||(28517158-28517342)
chr7 (18-204)||(5825325-5825508)
chr7 (18-203)||(24527641-24527826)
chr7 (18-175)||(22198038-22198194)
chr7 (18-175)||(22239627-22239783)
chr7 (18-206)||(43856926-43857113)
chr7 (18-192)||(27521523-27521694)
chr7 (18-179)||(32584653-32584813)
chr7 (131-183)||(47679289-47679341)
chr7 (125-194)||(10905262-10905332)
chr7 (18-85)||(30216046-30216113)
chr7 (18-77)||(40726476-40726535)
chr7 (18-95)||(10905170-10905246)
chr7 (128-205)||(38839489-38839564)
chr7 (110-172)||(33202368-33202429)
chr7 (128-174)||(43383330-43383376)
chr7 (18-107)||(9281098-9281186)
chr7 (18-107)||(9292069-9292157)
chr7 (33-78)||(34067857-34067902)
chr7 (147-204)||(38596635-38596692)
chr7 (18-83)||(42295174-42295239)
[»] chr3 (24 HSPs)
chr3 (18-204)||(53785761-53785946)
chr3 (18-200)||(44198819-44199000)
chr3 (18-204)||(39583099-39583284)
chr3 (18-199)||(13582561-13582741)
chr3 (18-203)||(7900910-7901094)
chr3 (17-206)||(49018014-49018202)
chr3 (18-206)||(52741379-52741567)
chr3 (18-200)||(37132874-37133054)
chr3 (18-187)||(38146108-38146276)
chr3 (134-206)||(29861964-29862036)
chr3 (121-204)||(54508255-54508337)
chr3 (18-107)||(26772810-26772899)
chr3 (137-205)||(37992502-37992570)
chr3 (17-84)||(3443301-3443368)
chr3 (131-206)||(7501879-7501954)
chr3 (18-175)||(46940669-46940825)
chr3 (18-72)||(32546847-32546901)
chr3 (18-66)||(38670887-38670935)
chr3 (127-174)||(35236366-35236413)
chr3 (127-206)||(52411770-52411849)
chr3 (18-204)||(5338695-5338884)
chr3 (139-207)||(26393670-26393738)
chr3 (133-165)||(35484601-35484633)
chr3 (18-50)||(51234668-51234700)
[»] chr5 (27 HSPs)
chr5 (18-206)||(32269665-32269852)
chr5 (18-203)||(33691926-33692110)
chr5 (20-204)||(35310502-35310685)
chr5 (18-204)||(27336745-27336930)
chr5 (18-182)||(14423730-14423893)
chr5 (18-203)||(15291897-15292081)
chr5 (18-204)||(13166780-13166965)
chr5 (18-206)||(43129586-43129772)
chr5 (18-175)||(26212482-26212638)
chr5 (47-204)||(433373-433529)
chr5 (18-203)||(34335389-34335573)
chr5 (18-206)||(3114032-3114218)
chr5 (22-203)||(35456012-35456192)
chr5 (18-107)||(37873604-37873693)
chr5 (110-203)||(38446309-38446402)
chr5 (18-152)||(8100604-8100737)
chr5 (125-183)||(27355607-27355665)
chr5 (20-84)||(32230496-32230560)
chr5 (18-101)||(38875690-38875773)
chr5 (18-109)||(42921749-42921840)
chr5 (18-96)||(25663009-25663087)
chr5 (19-87)||(8858969-8859037)
chr5 (127-189)||(9841212-9841274)
chr5 (18-78)||(9829348-9829407)
chr5 (133-182)||(7716345-7716391)
chr5 (18-173)||(43115359-43115512)
chr5 (18-50)||(430654-430686)
[»] chr1 (21 HSPs)
chr1 (18-194)||(19035499-19035674)
chr1 (18-206)||(28040995-28041182)
chr1 (18-203)||(45659518-45659703)
chr1 (18-204)||(29169664-29169848)
chr1 (18-204)||(34644618-34644803)
chr1 (18-204)||(20259668-20259852)
chr1 (18-207)||(4861856-4862044)
chr1 (17-203)||(50161288-50161473)
chr1 (127-204)||(37932088-37932165)
chr1 (22-177)||(22346951-22347103)
chr1 (18-84)||(21473055-21473121)
chr1 (17-174)||(2764530-2764686)
chr1 (18-83)||(31737313-31737378)
chr1 (110-161)||(2898840-2898891)
chr1 (23-78)||(35387655-35387710)
chr1 (125-179)||(37200140-37200193)
chr1 (133-207)||(37917963-37918037)
chr1 (18-92)||(50314605-50314679)
chr1 (161-206)||(35387185-35387230)
chr1 (137-206)||(38731750-38731819)
chr1 (132-200)||(15585027-15585095)
[»] chr8 (19 HSPs)
chr8 (18-204)||(500279-500464)
chr8 (18-204)||(39434719-39434904)
chr8 (18-183)||(24125080-24125244)
chr8 (23-206)||(35739855-35740036)
chr8 (17-206)||(25021682-25021870)
chr8 (18-204)||(3188021-3188206)
chr8 (35-203)||(37517163-37517330)
chr8 (18-200)||(38815346-38815517)
chr8 (18-153)||(6592627-6592760)
chr8 (18-85)||(8882379-8882446)
chr8 (18-206)||(8619866-8620047)
chr8 (128-192)||(40839713-40839776)
chr8 (127-203)||(10189703-10189779)
chr8 (127-203)||(11611120-11611195)
chr8 (18-93)||(28196244-28196319)
chr8 (142-205)||(42921996-42922059)
chr8 (18-74)||(36004174-36004230)
chr8 (125-182)||(4700026-4700083)
chr8 (126-194)||(8115970-8116038)
[»] chr4 (26 HSPs)
chr4 (18-203)||(53619638-53619822)
chr4 (18-206)||(132437-132626)
chr4 (26-204)||(50000795-50000972)
chr4 (19-203)||(30940610-30940793)
chr4 (18-206)||(31847139-31847326)
chr4 (18-206)||(55933330-55933517)
chr4 (22-204)||(25504351-25504530)
chr4 (29-183)||(53170570-53170723)
chr4 (24-201)||(26521546-26521722)
chr4 (18-203)||(56461978-56462161)
chr4 (18-206)||(16957594-16957775)
chr4 (94-206)||(3330078-3330189)
chr4 (18-204)||(12918242-12918427)
chr4 (18-84)||(23255756-23255822)
chr4 (110-203)||(25706652-25706745)
chr4 (139-206)||(12053583-12053650)
chr4 (131-183)||(54927620-54927672)
chr4 (161-204)||(6865683-6865726)
chr4 (18-107)||(50462912-50463001)
chr4 (141-205)||(53098579-53098644)
chr4 (18-78)||(600687-600747)
chr4 (128-204)||(38535456-38535532)
chr4 (18-66)||(48656917-48656965)
chr4 (127-206)||(9815729-9815807)
chr4 (152-203)||(18534585-18534636)
chr4 (128-195)||(24720095-24720162)
[»] chr6 (18 HSPs)
chr6 (18-206)||(33220579-33220766)
chr6 (24-206)||(357585-357766)
chr6 (18-204)||(34304548-34304733)
chr6 (18-204)||(4206466-4206651)
chr6 (50-204)||(32115773-32115926)
chr6 (19-203)||(12401384-12401567)
chr6 (18-194)||(959632-959807)
chr6 (18-206)||(45537-45732)
chr6 (18-180)||(17249199-17249360)
chr6 (18-206)||(28543427-28543614)
chr6 (18-194)||(34415488-34415663)
chr6 (18-109)||(34168920-34169011)
chr6 (56-194)||(28008867-28009004)
chr6 (18-76)||(4165919-4165977)
chr6 (18-182)||(34554169-34554332)
chr6 (112-182)||(24016481-24016551)
chr6 (153-206)||(29337951-29338004)
chr6 (18-78)||(29338074-29338134)
[»] scaffold0490 (1 HSPs)
scaffold0490 (18-176)||(6386-6542)
[»] scaffold0148 (1 HSPs)
scaffold0148 (18-204)||(33302-33488)
[»] scaffold0009 (1 HSPs)
scaffold0009 (18-136)||(103158-103274)
[»] scaffold0110 (1 HSPs)
scaffold0110 (18-203)||(47410-47594)
[»] scaffold0186 (2 HSPs)
scaffold0186 (18-149)||(10412-10546)
scaffold0186 (162-205)||(19916-19959)
[»] scaffold0493 (1 HSPs)
scaffold0493 (128-184)||(8406-8462)


Alignment Details
Target: scaffold1768 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 239 - 54
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||    
T  239 aaatggtataaaagcatgttgatggtcataacccactgtctcatgtttggccactttgcttgacgcagtttttagggctgcctgtcctacag-taaaagg 141  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  140 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctatacatgcatgttttcctcctacccatccgtacatcataacatc 54  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 4413121 - 4412936
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||| | |||||| |||||||||||||| |||||||    
T  4413121 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacacagcttttagggttgcctgtcctacgg-taaaagg 4413023  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||    
T  4413022 tctgacacttaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtacaccataacatc 4412936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 23484993 - 23484809
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||  || |||||| ||||||||||||| || ||| || | ||||||||   ||||| ||  || |||||    
T  23484993 aaatggtataaaagcatgttgattgtcagaacatgctttctcatatttggccactttgtttgacgtagcttttagggctagttgtcccac-cgttaaagg 23484895  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23484894 cccgacacttaatcccacaagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacatcataacat 23484809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 41867963 - 41867778
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||  || ||||||||||| ||||||||||| |||||| | ||| ||||||||||||||| | |||||||    
T  41867963 aaatggtataaaagcatgttgattgtcagaacatgctttctcatgtttgaccactttgcttgacgcagcttttaaggctgcctgtcctac-gataaaagg 41867865  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     ||||||| ||||||||||||| |||||| | |||||||||||||||| ||||||||||| ||||| |||| ||||| |||||||||    
T  41867864 tccgacacctaatcccacaagtcgtgaaatctcagtcaagtctacacaagcatgttttccacctacccatctgtacaccataacatc 41867778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 9685470 - 9685306
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||| |||| | | |||||||||||| |||||| |||||||||    
T  9685470 aaatggtataaaagcatgttgattgtcagaacacgctttttcatgtttggccactttgcttgacgcggattttagggctgcctatcctac-ggtaaaagg 9685372  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
     | ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  9685371 tctgacacctaatcccacaagtggtgaaaccccagtcaagtctacacaatcatgttttccacctac 9685306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 17344690 - 17344875
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||| | |||||  | |||| ||||||||||| || ||| |||||| | | ||| ||| || |||||||| |||||||    
T  17344690 aaatggtataaaagcatgttgattgtgaaaacacgttttctcgtgtttggccaccttacttgacgcagctttaaggactggctttcctacgg-taaaagg 17344788  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  17344789 tctgacacctaatcccacaagttgtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatc 17344875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 18745009 - 18744826
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||| ||||||||||||| ||||| || |||| ||||||||||| |  ||| |||| | | | |||||| |||||  ||||| |||| ||    
T  18745009 aaatggtataaaagtatgttgattgtcagaacacgctttctcgtgtttggccacctaacttgacgctgctttaagggcttcctgtgttacgg-taaatgg 18744911  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataaca 202  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  18744910 cctgacacctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataaca 18744826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 19161838 - 19161653
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| ||||| || | ||||||||| ||||||| ||| |||||| | |||||| ||  ||||||||   |||||||    
T  19161838 aaatggtataaaaacatgttgattgtcagaacacgctttttcatgtttgcccacttttcttgacgcagattttagggatgtatgtcctacca-taaaagg 19161740  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    || ||||  ||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  19161739 cctgacatctaatctcacaagtggtgaaaccctattcaagtctacacatgcatgttttcctcctacccatccttacatcataacatc 19161653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 20142755 - 20142614
Alignment:
Q  58 tcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaag 157  Q
    ||||||||||||||||||||| ||| || | |||| |||||||||||||||| |||||||  |||||| ||||||||||||||||||| ||||| |||||    
T  20142755 tcatgtttggccactttgcttgacgaagcttttagagctgcctgtcctacgg-taaaaggtacgacacctaatcccacaagtggtgaagccccaatcaag 20142657  T
Q  158 tctacacatgcatgttttcctcctactcatccgtacatcataa 200  Q
    |||||||| ||||||||||| ||||| |||||||||| |||||    
T  20142656 tctacacaagcatgttttccacctacccatccgtacaccataa 20142614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 28225052 - 28225237
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| || || || |||||| ||||| |||||||||| |||||| | |||  | ||  |||||||| | ||||||     
T  28225052 aaatggtataaaagcatgttgattgtcagaatacgctttctcatatttggtcactttgcttgacgcagcttttaaagttgtttgtcctaccg-taaaagc 28225150  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    ||  || | ||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||| || |||||||||| |||||||||    
T  28225151 cctaactcctaagcccacaagtagtgaaaccccattcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatc 28225237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 5532471 - 5532635
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| ||||||||||||||||||||||| |||||  | ||||||||||| ||||||||||| |||||| | |||||||||| ||||||||  ||||||      
T  5532471 aaatagtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccactttgcttgacgcagcttttagggctgcatgtcctac-cgtaaaatc 5532569  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    |||||| | |||||| |  ||||||||||| || || ||||  ||||||||||||||| |||||||    
T  5532570 cccgacccctaatcctatgagtggtgaaactccggttaagttcacacatgcatgtttttctcctac 5532635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 44686490 - 44686628
Alignment:
Q  36 ttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatcccac 135  Q
    |||||||||| ||||| || |||||||||||||||| |||||| || ||| | ||||| ||| ||||||||  | |||||| |||||| | ||| |||||    
T  44686490 ttgattgtcagaacacgctttctcatgtttggccacattgcttgac-cagcttttaggactgtctgtcctatcg-taaaagccccgacccctaaacccac 44686587  T
Q  136 aagtggtgaaaccccagtcaagtctacacatgcatgttttc 176  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  44686588 aagtggtgaaaccccagtcaagtccacacatgcatgttttc 44686628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 27502419 - 27502598
Alignment:
Q  23 gtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccga 122  Q
    |||||||||||||||| |||||  |||||  | ||||||||||| ||||||||||| |||||| | |||||| |   |||||||  | ||||||  | ||    
T  27502419 gtataaaagcatgttgtttgtcggaacacgttttctcatgtttgaccactttgcttgacgcagcttttagggttat-tgtcctatcg-taaaagctctga 27502516  T
Q  123 cacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    | | ||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||| || |||||||||| |||||||||    
T  27502517 cccctaaacccacaagtggtgaaaccccattcaggtccacacatgcatgttttcctccaacccatccgtacaccataacatc 27502598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 204
Target Start/End: Original strand, 3825819 - 3825964
Alignment:
Q  58 tcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaag 157  Q
    ||||||||| ||||||||||| |||||| | ||||||||  ||||| ||| | |||||| || ||| | |||||||||||| ||||||||| || |||||    
T  3825819 tcatgtttgaccactttgcttgacgcagcttttagggctctctgtcataccg-taaaagtcctgacccctaatcccacaaggggtgaaacctcaatcaag 3825917  T
Q  158 tctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    || ||||||||||||||| |||||||||||  ||||| | |||||||    
T  3825918 tccacacatgcatgtttttctcctactcatttgtacaccttaacatc 3825964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 9675004 - 9675083
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||||||  ||||||||||||||| ||||||  | ||||||||||||||||||||||||| ||||||||||||||||||    
T  9675004 taatcccatgagtggtgaaaccccaatcaagttcatacatgcatgttttcctcctactcattcgtacatcataacatctg 9675083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 10579719 - 10579650
Alignment:
Q  134 acaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||  |||||| ||||||||    
T  10579719 acaagtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctacccactcgtacaccataacat 10579650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 7760793 - 7760734
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactca 186  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||    
T  7760793 taatcccacaagtggtgaaaccctagtcaagttcacacatgtatgttttcctcctactca 7760734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 13147081 - 13147003
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    |||||||| ||||||||||||| |||||||||  |||||| | ||||||| |||||| ||| |||||| ||||||||||    
T  13147081 taatcccataagtggtgaaaccacagtcaagttcacacatccgtgttttcttcctacccatgcgtacaccataacatct 13147003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2888569 - 2888627
Alignment:
Q  19 aatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgct 77  Q
    |||||||||||| |||||||||||||| |||||  | ||||||||||| ||||||||||    
T  2888569 aatggtataaaaacatgttgattgtcagaacacgttttctcatgtttgtccactttgct 2888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 29808127 - 29808175
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttgg 67  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  29808127 aaatggtataaaa-catgttgattgttataacacgctgtctcatgtttgg 29808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 29808232 - 29808296
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgt 191  Q
    |||||| | |||||||||||||||| |||| |  ||| ||||||||||||||| |||||||||||    
T  29808232 taatccaataagtggtgaaaccccaatcaaattcacaaatgcatgttttcctcgtactcatccgt 29808296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 34814874 - 34814826
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttg 66  Q
    ||||||||||||||||| |||||||||| ||||| || |||||||||||    
T  34814874 aaatggtataaaagcatattgattgtcagaacacgctttctcatgtttg 34814826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 33612496 - 33612438
Alignment:
Q  125 cttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    |||| ||||||||| ||||||||| |||||||||||| | ||||||| |||||| ||||    
T  33612496 cttactcccacaagcggtgaaacctcagtcaagtctatatatgcatgctttccttctac 33612438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 20142781 - 20142752
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcat 46  Q
    ||||||||||||||||||||||||||||||    
T  20142781 aaaatggtataaaagcatgttgattgtcat 20142752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 1296106 - 1296038
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcag 85  Q
    |||| ||||||||| |||||| ||||||| |||| | | ||||||||||||||| |||| || ||||||    
T  1296106 aaaaaggtataaaaacatgtttattgtcagaacatattttctcatgtttggccattttgtttgacgcag 1296038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 5679330 - 5679390
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgctt 78  Q
    ||||||||| |||| ||||||||| || |||||   | |||||||||||||||||||||||    
T  5679330 aaatggtatgaaaggatgttgattatcttaacatgttttctcatgtttggccactttgctt 5679390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 16351793 - 16351710
Alignment:
Q  119 ccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||||| |||| |||||| ||||||||| |  |||||||||||||||||||||| || ||| || ||| |||| | ||||||||    
T  16351793 ccgacacataattccacaaatggtgaaactct-gtcaagtctacacatgcatgttgtcttccaacccattcgtataccataacat 16351710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 44720379 - 44720427
Alignment:
Q  22 ggtataaaagcatgttgattgtcataacacactgtctcatgtttggcca 70  Q
    ||||||||| ||||||||||||||||||||  | | |||||||||||||    
T  44720379 ggtataaaaacatgttgattgtcataacacgttttttcatgtttggcca 44720427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 24 - 204
Target Start/End: Original strand, 4501316 - 4501495
Alignment:
Q  24 tataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgac 123  Q
    |||||||||||||||||||||| ||||| || |||||||||||||||||||| || |||||| | |||||| ||  |||||||||| |||||||||||||    
T  4501316 tataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttgacgcagcttttagggttgtttgtcctacgg-taaaaggcccgac 4501414  T
Q  124 acttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  4501415 acctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatc 4501495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 19277345 - 19277530
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||| |||||| | ||||| ||||||||||||| || ||||||    
T  19277345 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggctactttgcttgacgcagcttttaggactgcctgtcctac-ggcaaaagg 19277443  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     | || || |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| | |||||||||    
T  19277444 tctgaaacctaatccgacaagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtagaccataacatc 19277530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 45613897 - 45613712
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| |||||||| || | ||||||| ||| || ||| |||||  | |||||| || |||||||||||  ||||||    
T  45613897 aaatggtataaaaacatgttgattgtcagaacacactttcccgtgtttggtcaccttacttgacgcaacttttagggttgtctgtcctacgga-aaaagg 45613799  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  45613798 cccgacacctaatcctacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatc 45613712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 3676691 - 3676878
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctg-cctgtcctacgggtaaaag 116  Q
    ||||||||||||||||| ||||| || | ||||| || ||| ||||||| ||||||||||| |||||| | ||||||||| |||||||||||| ||||||    
T  3676691 aaatggtataaaagcatattgatagtaagaacacgctttctgatgtttgaccactttgcttgacgcagcttttagggctggcctgtcctacgg-taaaag 3676789  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  3676790 gaccgacacctaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccctacaccataacatct 3676878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 983001 - 983183
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||| |||||| | ||| |||||||||||||||   |||||||    
T  983001 aaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccactttgcttgacgcagcttttatggctgcctgtcctac-aataaaagg 983099  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataac 201  Q
     || |||| |||||||||||||||| |||||| ||||||||||||||| ||||||||| | ||||||||| |||||||||||||    
T  983100 tcccacacctaatcccacaagtggttaaaccctagtcaagtctacacaagcatgtttttcacctactcattcgtacatcataac 983183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 21326893 - 21326709
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||| | | |||||||||  |||||||| |||||||||    
T  21326893 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcggcttttagggctgtttgtcctac-ggtaaaagg 21326795  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
     ||||||| ||||||||||||||||||||| ||| |||| |||||||| | ||||||||| ||||| |||| ||||| ||||||||    
T  21326794 tccgacacctaatcccacaagtggtgaaactccaatcaaatctacacaagtatgttttccacctacccatctgtacaccataacat 21326709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 28517342 - 28517158
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||  ||||| || ||||||||||||||||||||||| |||||| | |||||| || ||||||||| | ||||||     
T  28517342 aaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccactttgcttgacgcagcttttagggttgtctgtcctactg-taaaagc 28517244  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||| || | ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| || |||||||||| ||||||||    
T  28517243 ccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttttcctccaacccatccgtacaccataacat 28517158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 5825325 - 5825508
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||||||||| |  | |||||||||  |||||||||| | |||| | |||||||| |||||||| | | ||||||     
T  5825325 aaatggtataaaaacatgttgattgtcataacacgcattgtcatgtttg--cactttgcttgatgcagcttttagggcttcctgtcctgccg-taaaagc 5825421  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    | |||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| |||||| |||||||||    
T  5825422 ctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccattcgtacaccataacatc 5825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 24527641 - 24527826
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||  ||||||| ||| || | | | ||||||||||||||||||| |||||||||    
T  24527641 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgttttcccactttacttgacactgcttttagggctgcctgtcctac-ggtaaaagg 24527739  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccta-ctcatccgtacatcataacat 203  Q
     ||||||| ||||||||||| || ||| |||| |||||||||||||||  |||||||||| |||| | |||||||||| ||| ||||    
T  24527740 tccgacacctaatcccacaaatgatgagaccctagtcaagtctacacaaacatgttttccacctatcccatccgtacaccatgacat 24527826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 22198038 - 22198194
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| ||||||||||||   |||||||| |||||||||||| |||||||||| |||| | | ||||||||||  |||||||   |||||||    
T  22198038 aaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgccgcttttagggctgcgcgtcctacca-taaaagg 22198136  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtttt 175  Q
    |||||||| ||||| ||||||||| ||||||||| |||| ||||||||||||||||||    
T  22198137 cccgacacctaatcgcacaagtggcgaaaccccaatcaaatctacacatgcatgtttt 22198194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 22239783 - 22239627
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| ||||||||||||   |||||||| |||||||||||| |||||||||| |||| | | ||||||||||  |||||||   |||||||    
T  22239783 aaatggtataaaaacatgttgattgttggaacacactttctcatgtttggtcactttgcttgacgccgcttttagggctgcgcgtcctacca-taaaagg 22239685  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtttt 175  Q
    |||||||| ||||| ||||||||| ||||||||| |||| ||||||||||||||||||    
T  22239684 cccgacacctaatcgcacaagtggcgaaaccccaatcaaatctacacatgcatgtttt 22239627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 43856926 - 43857113
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| ||||||| ||||||||||||||| ||||| || |||||||| | ||||||||| || |||||  | |||  | || ||||||||| | ||||||     
T  43856926 aaattgtataaacgcatgttgattgtcaaaacacgctttctcatgtctagccactttgattgacgcatcttttaatgttgtctgtcctactg-taaaagc 43857024  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||| | |||||||||||||||||||||||| |||||||| || |||| ||||||| ||||||| |||||||||| |||||||||||    
T  43857025 cccgacccctaatcccacaagtggtgaaacccccgtcaagtccacgcatgtatgtttttctcctacccatccgtacaccataacatctg 43857113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 27521523 - 27521694
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| ||||||| ||||||||||||||| |||||  | ||||||||||| |||||||| || |||||  | ||| || ||| |||||||| | |||||||    
T  27521523 aaattgtataaatgcatgttgattgtcagaacacgttttctcatgtttgaccactttgtttaacgcaacttttaagggtgcatgtcctaccg-taaaagg 27521621  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgta 192  Q
    |||||||| ||||||||||| |||||||| | |||||||||||||||||  ||||||| ||||||| ||||||||    
T  27521622 cccgacacctaatcccacaaatggtgaaatctcagtcaagtctacacat--atgtttttctcctacccatccgta 27521694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 32584653 - 32584813
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||| ||||||||| |||||||||| |||||  | ||||||||||| |||||||| || | ||| || |||||| ||| |||||||| | |||||      
T  32584653 aaatggtgtaaaagcatcttgattgtcagaacacgttttctcatgtttgaccactttgtttgatgcaatttttagggttgcatgtcctaccg-taaaatc 32584751  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctc 179  Q
    |||||| | |||||||||||| |||||||||| ||||||||| |||||||||||||||||||    
T  32584752 cccgacccctaatcccacaagaggtgaaacccgagtcaagtccacacatgcatgttttcctc 32584813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 47679289 - 47679341
Alignment:
Q  131 cccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||||||    
T  47679289 cccacaagtggtgaaaccctagtcaagtctagacatgtatgttttcctcctac 47679341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 194
Target Start/End: Original strand, 10905262 - 10905332
Alignment:
Q  125 cttaatcccacaagtggtgaaaccc-cagtcaagtctacacatgcatgttttcctcctactcatccgtaca 194  Q
    |||||||| ||||||||||||| || |||||||||  ||||||||||||||||||||||  ||||||||||    
T  10905262 cttaatccaacaagtggtgaaaacctcagtcaagttcacacatgcatgttttcctcctatccatccgtaca 10905332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 30216113 - 30216046
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcag 85  Q
    ||||||||||||| |||||||||||||| ||||| || |||||| |||| ||| ||||||| ||||||    
T  30216113 aaatggtataaaaacatgttgattgtcaaaacacgctttctcatatttgaccattttgcttgacgcag 30216046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 40726535 - 40726476
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgct 77  Q
    ||||||||||||| |||||||||||||| |||||| | | | ||||||||||||||||||    
T  40726535 aaatggtataaaaacatgttgattgtcagaacacattttattatgtttggccactttgct 40726476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 10905170 - 10905246
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggc 95  Q
    |||||||||||| ||||||||| ||||| |||||  | |||||| |||||||||||||||| |||||| | |||||||    
T  10905170 aaatggtataaa-gcatgttgagtgtcagaacactttttctcatatttggccactttgcttgacgcagcttttagggc 10905246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 38839489 - 38839564
Alignment:
Q  128 aatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    |||||||||| || ||||| | |||||||||| ||||||||||||||| ||| ||| |||||||||| ||||||||||    
T  38839489 aatcccacaa-tgatgaaatctcagtcaagtccacacatgcatgtttt-ctcttacacatccgtacaccataacatct 38839564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 33202429 - 33202368
Alignment:
Q  110 gtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgt 172  Q
    ||||||| ||| || | |||||||||||| |||||||||| ||||||||| ||||||||||||    
T  33202429 gtaaaagccccaacccctaatcccacaagcggtgaaaccc-agtcaagtccacacatgcatgt 33202368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 43383330 - 43383376
Alignment:
Q  128 aatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttt 174  Q
    |||||||||||||| ||||||||||||||||| ||  ||||||||||    
T  43383330 aatcccacaagtggggaaaccccagtcaagtcgacgtatgcatgttt 43383376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 9281186 - 9281098
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctac 107  Q
    |||| ||||||||||||||||||||| | ||||| || |||||||||| || | ||||||| | |||| | |||||| || |||||||||    
T  9281186 aaatagtataaaagcatgttgattgttagaacacgctttctcatgttt-gctagtttgcttgatgcagcttttagggttgtctgtcctac 9281098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 9292157 - 9292069
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctac 107  Q
    |||| ||||||||||||||||||||| | ||||| || |||||||||| || | ||||||| | |||| | |||||| || |||||||||    
T  9292157 aaatagtataaaagcatgttgattgttagaacacgctttctcatgttt-gctagtttgcttgatgcagcttttagggttgtctgtcctac 9292069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 34067902 - 34067857
Alignment:
Q  33 atgttgattgtcataacacactgtctcatgtttggccactttgctt 78  Q
    ||||||||||||| |||||||| |||||||||||| ||||| ||||    
T  34067902 atgttgattgtcaaaacacactttctcatgtttggtcacttggctt 34067857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 38596635 - 38596692
Alignment:
Q  147 ccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    ||||||||||||| | |||||||| |||| || |||| |||||||||| |||||||||    
T  38596635 ccccagtcaagtccatacatgcatatttttcttctacacatccgtacaccataacatc 38596692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 42295239 - 42295174
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgc 83  Q
    ||||||||||||| |||||||||||||| || |  || ||| ||||||||||| ||||||| ||||    
T  42295239 aaatggtataaaaacatgttgattgtcagaagaagctttcttatgtttggccattttgcttgacgc 42295174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 53785761 - 53785946
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || |||| ||||||||||| || ||| |||| | | | |||||||||| |||||||| |||||||    
T  53785761 aaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttacttgacgcggctttaagggctgcctatcctacgg-taaaagg 53785859  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||    
T  53785860 cccgacacctaatcccactagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccaaaacatc 53785946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 44198819 - 44199000
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||| |||||  | |||| |||||||| ||||||| |||||||    
T  44198819 aaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagctgcctgacctacgg-taaaagg 44198917  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataa 200  Q
     ||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||| |||| |||||    
T  44198918 tccgacacctaatcccacaagtggtgaaaccccagtcaagtctacactaacatgttttccacctactcatccatacaccataa 44199000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 39583284 - 39583099
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||| | |||||||||||| ||||||   |||| ||    
T  39583284 aaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttagggctgcctatcctac-cataaatgg 39583186  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||| |||||||||||||||||| |||||  ||||||||| || |||||||||||||||||||| ||||||||||  ||||||||    
T  39583185 cccgacccttaatcccacaagtggtaaaacctaagtcaagtccacgcatgcatgttttcctcctacccatccgtacactataacatc 39583099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 13582561 - 13582741
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| || ||||||||||| |||||||| ||| |||||||  ||||||| || |||||| | |||||||||| |||||||||| |||||||    
T  13582561 aaatggtataaaaacacgttgattgtcagaacacactttcttatgtttgatcactttgattgacgcagcttttagggctgcttgtcctacgg-taaaagg 13582659  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcata 199  Q
    || ||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  13582660 cctgacacctaatcccacaagtgttgaaacctcggtcaagtctacacatgcatgttttcctcctacccatccatacaccata 13582741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 7900910 - 7901094
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| || || || ||||||||| ||| | ||||||| |||||||| |||||| |  | ||||||| | ||||||     
T  7900910 aaatggtataaaagcatgttgattgtcagaaaacgctttctcatgttcggctattttgcttgacgcagtttttagggatatccgtcctaccg-taaaaga 7901008  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||| || | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  |||| ||||||||    
T  7901009 cccaacccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctacacatctatacaccataacat 7901094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 49018014 - 49018202
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaag 116  Q
    |||||||||||||| |||||||||||| | |||||||| |||||||||||| ||||||| || ||| |  | | |||| ||| |||||||| | ||||||    
T  49018014 aaaatggtataaaaacatgttgattgttagaacacactttctcatgtttggtcactttgttttacgtaactttcagggttgcttgtcctaccg-taaaag 49018112  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    || |||||| |||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||  ||||||||| |||||||||||    
T  49018113 gctcgacacctaattccacaagtggtgaaactccagtcaagtttacacatgcatgttttcctcgtaccaatccgtacaccataacatctg 49018202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 52741567 - 52741379
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcag-ttcttagggctgcctgtcctacgggtaaaag 116  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||| || |||| || || ||| || |||||||||||||||||||   ||||||    
T  52741567 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggtcaatttgtttgactcagctttttagggctgcctgtcctacaa-taaaag 52741469  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    | || |||  |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||| | || ||||||||    
T  52741468 gtcctacatctaatcccacaagtggtgaaacctcagtcaagtctacacaagcatgttttccacctacccatccgtataccacaacatctg 52741379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 37133054 - 37132874
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| ||||| || ||||||||||  ||||||||||| ||| || | ||||||||| |||| || | | |||||||    
T  37133054 aaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttaaccactttgcttgacgtagcttttagggctgtctgttct-ccgataaaagg 37132956  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataa 200  Q
     | |||||||||||||||| ||||| ||||| || ||| |||||||||||||||||||  | |||| |||||||||| |||||    
T  37132955 tctgacacttaatcccacaggtggtaaaacctcaatcatgtctacacatgcatgtttt-tttctacacatccgtacaccataa 37132874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 38146108 - 38146276
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| |||||  ||||||  ||||| |||||||| || | || | | |||||||||| ||||||||   | ||||     
T  38146108 aaatggtataaaaacatgttgattgtcaaaacacgttgtctcgcgtttgaccactttgattgatgccgcttttagggctgcatgtcctac-cctcaaagc 38146206  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcat 187  Q
     ||||| | ||||||||||||| |||||||||||  ||||||  ||||||||| ||||||||| ||||||    
T  38146207 tccgacccctaatcccacaagtcgtgaaaccccatgcaagtcctcacatgcatattttcctccgactcat 38146276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 29861964 - 29862036
Alignment:
Q  134 acaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||||| | |||||||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||    
T  29861964 acaagtgtttaaaccccagtcaagttcacacatgcatgttttcctcctacccatccgtacaccataacatctg 29862036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 54508337 - 54508255
Alignment:
Q  121 gacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    ||||| |||||| |||||||||||||||||| ||||||  ||||||||||||||| || |||| |||||||||| |||||||||    
T  54508337 gacacctaatccaacaagtggtgaaaccccaatcaagtacacacatgcatgtttt-cttctacccatccgtacaccataacatc 54508255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 26772810 - 26772899
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctac 107  Q
    |||||||||||||||||||||||||||| |||||  | ||| ||||||||||||||||||| || ||  | |||||| ||| ||||||||    
T  26772810 aaatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggccactttgcttgacacaacttttagggatgcatgtcctac 26772899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 37992502 - 37992570
Alignment:
Q  137 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    |||| |||||||||  ||||||| |||||  |||||||||||||||| |||||||||||||||||||||    
T  37992502 agtgatgaaaccccgatcaagtccacacacacatgttttcctcctacccatccgtacatcataacatct 37992570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 3443368 - 3443301
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgca 84  Q
    ||||||||||||||||||||||||||| | || ||||| | ||||||||||||| ||||||| |||||    
T  3443368 aaaatggtataaaagcatgttgattgttagaatacactttttcatgtttggccattttgcttgacgca 3443301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 7501954 - 7501879
Alignment:
Q  131 cccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||| |||||||||||||  || |||||||||||||||||||||||| ||||  ||||||| | |||||||||||    
T  7501954 cccacgagtggtgaaaccctggttaagtctacacatgcatgttttccttctaccaatccgtataccataacatctg 7501879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 46940825 - 46940669
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||  ||||   | ||| ||||||||||||||||||| |||||  | |||| | || |||||||||   |||||      
T  46940825 aaatggtataaaagcatgttgattgtcggaacatgttttctaatgtttggccactttgcttgacgcatcttttagagttgtctgtcctac-cataaaatc 46940727  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtttt 175  Q
    | |||| | ||||||||| |||  ||||||| |||||||||  |||||| ||||||||    
T  46940726 ctcgacccctaatcccacgagtaatgaaacctcagtcaagttcacacatacatgtttt 46940669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32546847 - 32546901
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccact 72  Q
    |||||||||||||| ||||||||||||  ||||| || |||||||||||||||||    
T  32546847 aaatggtataaaagtatgttgattgtccgaacacgctttctcatgtttggccact 32546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 38670935 - 38670887
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttg 66  Q
    |||| ||||||||||||||||||||||| ||||| || |||||||||||    
T  38670935 aaattgtataaaagcatgttgattgtcagaacacgctttctcatgtttg 38670887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 35236366 - 35236413
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttt 174  Q
    |||||||||| ||||||||||| || ||||||| ||||||||||||||    
T  35236366 taatcccacaggtggtgaaacctcaatcaagtccacacatgcatgttt 35236413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 52411849 - 52411770
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||||||||||||| ||||| ||||| |||| ||| ||| | |||||||||||   ||| || |||||||||||||||    
T  52411849 taatcccacaagtggtaaaacctcagtcgagtccacatatgtaagttttcctcctgtccattcggacatcataacatctg 52411770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 5338695 - 5338884
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcat---aacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaa 114  Q
    |||| ||||||||||||||||| |||||    ||| |||| ||||||||||||| | |||| || |||||  ||||||||||  ||||||||| | ||||    
T  5338695 aaattgtataaaagcatgttgactgtcaacgcaacgcactttctcatgtttggcaattttgtttgacgcaactcttagggctttctgtcctaccg-taaa 5338793  T
Q  115 aggcccgaca--cttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    || | | | |  | ||||||||||||||||| ||||| | ||||||| ||| ||||||||||| || |||| ||| | |||| | |||||||    
T  5338794 ag-ctctaaatccctaatcccacaagtggtgtaacccaaatcaagtccacagatgcatgtttttcttctacccattcatacaccgtaacatc 5338884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 26393670 - 26393738
Alignment:
Q  139 tggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctgt 207  Q
    |||||||||||||||||  |||||||||| || |||||||||||  | |||||||  ||||| ||||||    
T  26393670 tggtgaaaccccagtcagatctacacatgtatattttcctcctatccctccgtaccccataatatctgt 26393738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 35484633 - 35484601
Alignment:
Q  133 cacaagtggtgaaaccccagtcaagtctacaca 165  Q
    ||||||| |||||||||||||||||||||||||    
T  35484633 cacaagttgtgaaaccccagtcaagtctacaca 35484601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 51234668 - 51234700
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataaca 50  Q
    ||||||||||||||||||||| |||||||||||    
T  51234668 aaatggtataaaagcatgttggttgtcataaca 51234700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 32269852 - 32269665
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||| || | |||| | |||||| ||| ||||||||   |||||||    
T  32269852 aaatggtataaaagcgtgttgattgtcagaacacactttctcatgtttgaccactttggttgatgcagcttttagggttgcatgtcctacca-taaaagg 32269754  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32269753 cccgacacctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatctg 32269665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 33692110 - 33691926
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||| |||||||||||||||||||||||||  | | ||||||||||||||||||||| |||||| | ||||| ||||||||||||| | ||||||     
T  33692110 aaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccactttgcttgacgcagcttttaggcctgcctgtcctaccg-taaaagc 33692012  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    |||||| | ||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||| ||||||||    
T  33692011 cccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacat 33691926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 35310502 - 35310685
Alignment:
Q  20 atggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcc 119  Q
    |||||||||||||||||||||||||| ||||  || ||||||||||||||||||||||| |||||  | |||||| || ||||||||| | |||||| ||    
T  35310502 atggtataaaagcatgttgattgtcagaacatgctttctcatgtttggccactttgcttgacgcatcttttagggttgtctgtcctaccg-taaaagccc 35310600  T
Q  120 cgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||| | ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  35310601 cgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccaacccatccgtacatcataacatc 35310685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 27336745 - 27336930
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||| ||||||||||||| |||||  | ||||||||||| ||||||||||| |||||  | ||||||||| ||||||||  | ||||||     
T  27336745 aaatggtataaaagtatgttgattgtcagaacacgatttctcatgtttgaccactttgcttgacgcaacttttagggctgtctgtcctattg-taaaagc 27336843  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    ||| || | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||    
T  27336844 ccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatc 27336930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 14423730 - 14423893
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||| || |||||||||| ||||| || |||||| |||||||||||| ||| |||||    
T  14423730 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgttcggtcactttgcttgacgcattttttagggttgcctgtcctac-ggttaaagg 14423828  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccta 182  Q
     ||||||| ||||||||||||||||||||||||| |||||||| |||| |||| |||||| ||||    
T  14423829 tccgacacctaatcccacaagtggtgaaaccccaatcaagtcttcacaagcatattttccaccta 14423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 15292081 - 15291897
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| |||||||| |||||||||||||| |||||  | |||||||||||||||||||| || ||||   | |||||| || ||||| ||| |  ||||||    
T  15292081 aaattgtataaaaacatgttgattgtcagaacacgttttctcatgtttggccactttgtttgacgccacttttagggttgtctgtcataccgc-aaaagg 15291983  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||  |||||||||||||||| || ||||||| ||||||||    
T  15291982 cccgacacttaatccaacaagtggtgaaacctcattcaagtctacacaaacatgttttcctcctacccagccgtacaccataacat 15291897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 13166965 - 13166780
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||| |||||| | |||||| || |||||| ||  |||||||     
T  13166965 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttagccactttgcttgacgcagattttagggttgtctgtcccac-cgtaaaagc 13166867  T
Q  118 cccgacac-ttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    ||  || | | ||  ||||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||| | |||||||||    
T  13166866 cctaacccataaaatccacaagtggtgaaa-cccagtcaagtccacacatgcatgttttcctccaacccatccgtagaccataacatc 13166780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 43129586 - 43129772
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||| |||| |||||||||||||| |||||  | ||||||||||| ||||||||||| |||||  | ||||| |||  ||||| ||  |||||||     
T  43129586 aaatggtagaaaaacatgttgattgtcagaacacgttttctcatgtttgaccactttgcttgacgcatcttttaggactgaatgtccaac-cgtaaaagt 43129684  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
     ||||| | |||||| ||||||||||||||||||||||| |  |||||||||| |||||||||||  ||||||||||||||||||||||    
T  43129685 tccgacccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcat-ttttcctcctatccatccgtacatcataacatctg 43129772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 26212638 - 26212482
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||||||||||| |||| || || || ||||||||||||||||||||||| |||||  | ||||  |||||  ||| || | |||||||    
T  26212638 aaatggtataaaagcatgttgatcgtcagaatacgctttctcatgtttggccactttgcttgacgcaacttttagaactgccattccaac-gataaaagg 26212540  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtttt 175  Q
     || |||| ||||| |||||||| ||||||||||||||| ||||||||||||| ||||    
T  26212539 tccaacacctaatctcacaagtgatgaaaccccagtcaaatctacacatgcatttttt 26212482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 433373 - 433529
Alignment:
Q  47 aacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatcccacaagtggtgaaa 146  Q
    ||||| || ||||||||||||||||||||||| || ||| | ||| || || || |||||| | |||||| ||| || ||||| |||||| |||||||||    
T  433373 aacacgctttctcatgtttggccactttgcttgacacagcttttaaggttgtctatcctaccg-taaaagcccctacccttaaacccacaggtggtgaaa 433471  T
Q  147 ccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||| |||||||| |||||||||| ||||||||| || |||| ||||| |||||||||    
T  433472 ccccggtcaagtccacacatgcatattttcctccaacccatctgtacaccataacatc 433529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 34335389 - 34335573
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||||||||||||||||  |||| || ||||||||||||||  ||||||| ||   | | |||||| || || |||||| | ||||||     
T  34335389 aaatggtataaaagcatgttgattgtcaggacacgctttctcatgtttggcccttttgcttgacatggcttttagggttgtctatcctacag-taaaagc 34335487  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
       ||| |||||||| ||||||| |  ||||||||| || || |||||||||||||||||||||||||||  ||||| ||||||||    
T  34335488 tttgacccttaatcctacaagtgatagaaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacat 34335573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 3114218 - 3114032
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||| ||||| ||||  || |||||||||||||||||||| || | |||  | |||||||||||||||||||  |||||||     
T  3114218 aaatggtataaaaacatgttgactgtcagaacatgctttctcatgtttggccactttgtttgatgcaacttttagggctgcctgtcctac-cgtaaaagc 3114120  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||| | ||||||||  ||||||||||  |  |||||||||||| |||  || ||||||| ||| |||  ||||| |||||||||||    
T  3114119 cccgacccctaatcccatgagtggtgaaatactggtcaagtctacaaatgagtg-tttcctcttacccatttgtacaccataacatctg 3114032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 35456012 - 35456192
Alignment:
Q  22 ggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccg 121  Q
    |||||||||||||||||||||| | ||||| || ||||||||||| ||| ||| ||| || ||  | || ||||| |||  |||||  |||||||||| |    
T  35456012 ggtataaaagcatgttgattgttagaacacgctttctcatgtttgaccattttacttaacacaactttttgggctacctaccctac-cgtaaaaggccgg 35456110  T
Q  122 acacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    || | |||||| || |||||  ||||||| |||||||| |||||||||| ||| |||||||| |||| ||||| ||||||||    
T  35456111 acccctaatcctacgagtggcaaaaccccggtcaagtccacacatgcatatttacctcctacccatctgtacaccataacat 35456192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 37873693 - 37873604
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctac 107  Q
    ||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |||||  | |||| |||| |||||||||    
T  37873693 aaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagctgtctgtcctac 37873604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 38446309 - 38446402
Alignment:
Q  110 gtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||||| ||| || | ||| |||||||||||||||||| |||||||||| ||||||||||||||| |||| || |||||||||| ||||||||    
T  38446309 gtaaaagccccaactcctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttactccaacccatccgtacaccataacat 38446402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 8100604 - 8100737
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||  ||||||| |||||  | ||||||||||| ||| ||| ||| | ||||   |||||| ||| ||||||||   |||| |     
T  8100604 aaatggtataaaagcatgtaaattgtcacaacacgttttctcatgtttgaccattttacttgatgcagcgtttagggatgcatgtcctactattaaa-gt 8100702  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccag 152  Q
    |||||| ||||||||||||||||||||||||||||    
T  8100703 cccgactcttaatcccacaagtggtgaaaccccag 8100737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 27355665 - 27355607
Alignment:
Q  125 cttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    ||||||||||||||||||||||||||| |||| || |||||| ||||||||||||||||    
T  27355665 cttaatcccacaagtggtgaaaccccattcaattcaacacatccatgttttcctcctac 27355607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 32230560 - 32230496
Alignment:
Q  20 atggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgca 84  Q
    ||||||||||||| |||||||||||| |||||| | |||||||||||| |||||||||| |||||    
T  32230560 atggtataaaagcttgttgattgtcagaacacattttctcatgtttggtcactttgcttgacgca 32230496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 38875690 - 38875773
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctg 101  Q
    |||||||| |||| |||||||||||||| |||||||| |||||||||||| | ||||| || | |||||| |||||| ||||||    
T  38875690 aaatggtacaaaaacatgttgattgtcagaacacactttctcatgtttggtcgctttgtttgatgcagtttttagggttgcctg 38875773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 42921749 - 42921840
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgg 109  Q
    |||||||||||||||||||||||||||| |||||  | |||| |||||| ||||  | ||| ||| |||| ||||||||||||||| |||||    
T  42921749 aaatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttgaccaccatacttaacgtagtttttagggctgcctgtcttacgg 42921840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 25663087 - 25663009
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggct 96  Q
    ||||||||||||| |||||||||| ||| ||||| || |||||||||||||||||||| || | |||| | ||||||||    
T  25663087 aaatggtataaaaacatgttgattatcagaacacgctttctcatgtttggccactttgtttgatgcagcttttagggct 25663009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 8858969 - 8859037
Alignment:
Q  19 aatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagtt 87  Q
    |||| ||||||| |||||||||||||| ||||| || ||||||||||| | ||||||||| ||||||||    
T  8858969 aatgatataaaaacatgttgattgtcagaacacgctttctcatgtttgactactttgcttgacgcagtt 8859037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 9841274 - 9841212
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatcc 189  Q
    ||||||||||||||||||||||| | |||||| |||||| ||||||||| || |||| |||||    
T  9841274 taatcccacaagtggtgaaaccctactcaagtttacacacgcatgtttttcttctacccatcc 9841212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 9829407 - 9829348
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgctt 78  Q
    |||||||||||||||||||||||||||| |||||| | | ||||| || ||||||||||||    
T  9829407 aaatggtataaaagcatgttgattgtcaaaacacattttatcatg-ttagccactttgctt 9829348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 7716345 - 7716391
Alignment:
Q  133 cacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccta 182  Q
    |||||||||||||||   ||||||||||||| ||||||||||||||||||    
T  7716345 cacaagtggtgaaac---agtcaagtctacaaatgcatgttttcctccta 7716391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 43115512 - 43115359
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||| ||| |||||||||||||||||| ||||| || |||||| |||| || ||||  || |||||  | ||||||||| || ||||||  |||||||     
T  43115512 aaatgctatgaaagcatgttgattgtcaaaacacgctttctcatatttgaccgcttt-atttacgcaacttttagggctgtctatcctac-cgtaaaagc 43115415  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgtt 173  Q
    ||||||   ||||||||  ||||||||||||||  |||| || | |||||||||||    
T  43115414 cccgacctctaatcccatgagtggtgaaaccccgatcaaatccatacatgcatgtt 43115359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 430654 - 430686
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataaca 50  Q
    |||||||||||||||||||||||||||| ||||    
T  430654 aaatggtataaaagcatgttgattgtcagaaca 430686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 5e-55; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 19035499 - 19035674
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||| | ||||||||||||| ||||| |||||||||    
T  19035499 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcagcttttagggctgcctgccctac-ggtaaaagg 19035597  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtaca 194  Q
     ||||||| ||||||||||| |||||||| |||||||||||||||||| |||||| |||| ||||| ||||||||||    
T  19035598 tccgacacctaatcccacaactggtgaaatcccagtcaagtctacacaagcatgtgttccacctacccatccgtaca 19035674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 28041182 - 28040995
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||| || |||| | | |||| ||||||| |||||||| |||||||    
T  28041182 aaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcggattttagagctgcctatcctacgg-taaaagg 28041084  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
     ||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| |||||||||||    
T  28041083 tccgacacctaatcccacaagtagtgaaaccccagtcaagtctacacaagcatgttttccacctacccatctgtacaccataacatctg 28040995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 45659703 - 45659518
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttctta-gggctgcctgtcctacgggtaaaag 116  Q
    |||||||||||||||||||||||||||| ||||| || |||| ||||||||||| || ||| |||||| | ||| ||||||| |||||||||| ||||||    
T  45659703 aaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttacttgacgcagcttttaagggctgcatgtcctacgg-taaaag 45659605  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||  |||||||    
T  45659604 gcccgatacctaatcccacaagtggtgaaaccccagtcaagtctacgcatgcatgttttcctcctacccatctgtacactataacat 45659518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 29169848 - 29169664
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| |||||  | |||| ||||||||||| || ||| || ||  | | ||||||| ||||||||||| |||||||    
T  29169848 aaatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttggccaccttacttgacacaactttaagggctgtctgtcctacgg-taaaagg 29169750  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  29169749 cccgacacctaatccca-aagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatc 29169664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 34644618 - 34644803
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||||||| | |||||| ||||| || |||||||||||||||||||| || |||||  | |||||| ||| |||||||| | ||||||     
T  34644618 aaatggtataaaagcatgtaggttgtcagaacacgctttctcatgtttggccactttgtttgacgcaacttttagggttgcttgtcctaccg-taaaagc 34644716  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||| |||| |||||||||    
T  34644717 cccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccagcccatccatacaccataacatc 34644803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 20259852 - 20259668
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| ||||| || |||||| |||  ||||||||||| ||| || | |||||||| |||||  | ||| |||||||    
T  20259852 aaatggtataaaaacatgttgattgtcagaacacgctttctcatttttaaccactttgcttgacgtagcttttagggctacctgttttccgg-taaaagg 20259754  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     | ||||| |||||||||||| ||| |||||| ||||| ||||||||||||||||||| | ||||| |||| ||||| |||||||||    
T  20259753 tctgacacctaatcccacaagcggtaaaaccctagtcatgtctacacatgcatgtttttc-cctacccatctgtacaccataacatc 20259668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 4862044 - 4861856
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| ||||||||| |||||| |||||| || || || ||||||||||| ||| ||| ||| |||||  | ||| ||||| |||||||||   |||| |     
T  4862044 aaattgtataaaagtatgttgcttgtcagaagacgctttctcatgtttgaccattttacttgacgcaacttttaaggctgtctgtcctacca-taaatgt 4861946  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctgt 207  Q
    |  ||| | |||||| |||||||||||||| |||||||| || ||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  4861945 caagacccctaatccaacaagtggtgaaacaccagtcaaatccacacatgcatgtttttctcctacccatccgtacaccataacatctgt 4861856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 50161473 - 50161288
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaag 116  Q
    |||||| |||||||||||||||||||| | ||||| || ||||||||||| ||||||||||| |||||  | |||||| || |||||||||  |||||||    
T  50161473 aaaatgatataaaagcatgttgattgtgagaacacgctttctcatgtttgtccactttgcttgacgcaacttttagggttgtctgtcctac-cgtaaaag 50161375  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
     | |  | | |||| |||| ||||||||||   | || ||||| ||||||||||||||| ||| ||| || ||||||| ||||||||    
T  50161374 tctcagcccctaattccacgagtggtgaaatatcggttaagtccacacatgcatgtttttctcttacccaaccgtacaccataacat 50161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 37932165 - 37932088
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||||||||||||||||| || ||||||| || ||||||||||||||||||   |||  |||||||||||||||    
T  37932165 taatcccacaagtggtgaaacctcaatcaagtccacgcatgcatgttttcctcctgtccatatgtacatcataacatc 37932088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 22346951 - 22347103
Alignment:
Q  22 ggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccg 121  Q
    |||||||| ||||||||||||||| ||||| || |||||| |||||||||||||||| ||  |  | ||| || ||  |||||||| ||||||| | |||    
T  22346951 ggtataaacgcatgttgattgtcagaacacgctttctcatatttggccactttgcttgacataactttta-ggttgtttgtcctac-ggtaaaaagtccg 22347048  T
Q  122 acacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcc 177  Q
    | |  |||| |||||||||||||||| ||| ||||||||||| | |||||||||||    
T  22347049 aaatctaat-ccacaagtggtgaaacaccaatcaagtctacagaagcatgttttcc 22347103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 21473055 - 21473121
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgca 84  Q
    ||||||||||||| |||||||||||||| ||||| || ||||||||||||||| ||| ||| |||||    
T  21473055 aaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccattttacttgacgca 21473121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 2764530 - 2764686
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaag 116  Q
    ||||||| ||||||||||||||||||||  |||||  | ||||||||||| ||||||||  | || ||  | ||||| |||||| ||||||   ||||||    
T  2764530 aaaatggcataaaagcatgttgattgtcggaacacgttttctcatgtttgaccactttgtctgacacaacttttaggactgcctatcctac-cataaaag 2764628  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttt 174  Q
      || || | ||| |||||||||||||||||| || ||||||  ||||||||||||||    
T  2764629 caccaacccctaaacccacaagtggtgaaacctcaatcaagttcacacatgcatgttt 2764686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 31737378 - 31737313
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgc 83  Q
    |||||||||||||||||||||||||||| || |   | ||||||||||||||||||||||| ||||    
T  31737378 aaatggtataaaagcatgttgattgtcagaatatgttttctcatgtttggccactttgcttgacgc 31737313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 2898840 - 2898891
Alignment:
Q  110 gtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtcta 161  Q
    |||||||||||||||| ||||| ||||||||||||||||| | |||||||||    
T  2898840 gtaaaaggcccgacacctaatcacacaagtggtgaaacccaaatcaagtcta 2898891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 35387710 - 35387655
Alignment:
Q  23 gtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgctt 78  Q
    |||||||||| ||||||| |||| |||||||| | |||||||||||||||||||||    
T  35387710 gtataaaagcttgttgatcgtcagaacacactttttcatgtttggccactttgctt 35387655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 37200140 - 37200193
Alignment:
Q  125 cttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctc 179  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||||||||||||    
T  37200140 cttaatcccacgagtggtgaaacatcagtcaagtc-acacatgcatgttttcctc 37200193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 37918037 - 37917963
Alignment:
Q  133 cacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctgt 207  Q
    |||||||||||||| | || ||||||| ||||||| ||||||||  | |||||| | ||||| ||||||||||||    
T  37918037 cacaagtggtgaaatctcaatcaagtcaacacatgtatgttttcaccttactcacctgtacaccataacatctgt 37917963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 50314679 - 50314605
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttag 92  Q
    |||||||||||||||||||||||||| | ||||   | | ||||||||| ||||||||||| | |||| ||||||    
T  50314679 aaatggtataaaagcatgttgattgtgagaacaagttttgtcatgtttgaccactttgctttatgcagctcttag 50314605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 35387230 - 35387185
Alignment:
Q  161 acacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||||||||||| |||| ||| |||| |||||||||||||||||    
T  35387230 acacatgcatgtttacctcttacacatctgtacatcataacatctg 35387185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 38731750 - 38731819
Alignment:
Q  137 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||||||||||| |||||| || |||  ||||| |||||||||||| |||||| ||| ||||| |||||    
T  38731750 agtggtgaaaccctagtcaaatccacatttgcatattttcctcctacccatccgcacaccataatatctg 38731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 15585027 - 15585095
Alignment:
Q  132 ccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataa 200  Q
    |||||||||| |||||||||||||| ||||| |||| |||| | |||| ||||||| | |||| |||||    
T  15585027 ccacaagtggggaaaccccagtcaactctacccatgtatgtctccctcttactcattcctacaccataa 15585095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 500279 - 500464
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||| |||||  | ||||||||| | ||||||| | |||||||    
T  500279 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcaacttttagggctgtcggtcctaccg-taaaagg 500377  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||| |||| |||||||||    
T  500378 cccgacacctaatcccacaagtggtgaaacctcactcaagtctacacatgcatgttttccttctacccatccatacaacataacatc 500464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 39434719 - 39434904
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||  | |||| ||| ||||||||||  |||||||     
T  39434719 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgcttgacgcaacttttagagcttcctgtcctac-tgtaaaagc 39434817  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    | | || | ||| ||||||||||||||||||||||||||||  |||||||||||||||||||| || |||||||||| |||||||||    
T  39434818 ctccacccctaaacccacaagtggtgaaaccccagtcaagtacacacatgcatgttttcctccaacccatccgtacaccataacatc 39434904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 24125080 - 24125244
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| | ||| || ||||||||||||||| ||||||| | |||| | |||||||||| ||||| || | |||||||    
T  24125080 aaatggtataaaagcatgttgattgtcagagcacgctttctcatgtttggccattttgcttgatgcagcttttagggctgcttgtcccaccg-taaaagg 24125178  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24125179 cacgacgcataatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcttcctac 24125244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 35740036 - 35739855
Alignment:
Q  23 gtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccga 122  Q
    |||||||| |||||||||||||| ||| | || ||||||||||||||||||||||| || ||  | |||||| || ||||||||| | ||||||||||||    
T  35740036 gtataaaaacatgttgattgtcagaacccgctttctcatgtttggccactttgcttaacacaacttttagggatgtctgtcctaccg-taaaaggcccga 35739938  T
Q  123 cacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||| |||||||||||    
T  35739937 c-cttaatcccactagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctacccattcatacaccataacatctg 35739855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 25021870 - 25021682
Alignment:
Q  17 aaaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaag 116  Q
    |||||||||||||| |||||||||||| | |||||||| |||||| |||  ||||||||||| || ||  | |||||||||  |||| ||| | |||||     
T  25021870 aaaatggtataaaaacatgttgattgtgagaacacactttctcatatttcaccactttgcttgacacaacttttagggctgtatgtcatactg-taaaaa 25021772  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
       |||| | ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  25021771 catcgacccctaatcccacaagtggtgaaactccggtcaagtccacacatgcatgttttcctcctacccatccgtacaccataacatctg 25021682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 3188021 - 3188206
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttag-ggctgcctgtcctacgggtaaaag 116  Q
    |||||||||||||||||||||||||||| ||||| ||  ||||||||| |||||||||||| | |||  | |||| |||| |||||||||| | ||||||    
T  3188021 aaatggtataaaagcatgttgattgtcagaacacgcttcctcatgttttgccactttgcttgatgcaacttttagaggcttcctgtcctaccg-taaaag 3188119  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     |||||| || || |||||||||||||||||||||  |||| | |||||||||||||||||||| |  |||||||||| |||||||||    
T  3188120 ccccgaccctaaa-cccacaagtggtgaaaccccacacaaggccacacatgcatgttttcctccaatccatccgtacaccataacatc 3188206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 37517163 - 37517330
Alignment:
Q  35 gttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatccca 134  Q
    ||||||||||  ||||| || ||||||||||||||||||||||| | |||| | |||| |||| ||||||||||| ||||||| || || | |||||| |    
T  37517163 gttgattgtcggaacaccctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctacgg-taaaaggtcctacgcctaatccaa 37517261  T
Q  135 caagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||||| |||||||||||||||||||||||  ||| |||||| ||||| |||||||||| ||| ||||    
T  37517262 caagtggcgaaaccccagtcaagtctacacaaacatattttccacctacccatccgtacaccatcacat 37517330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 38815346 - 38815517
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||  ||  | | ||||||||| |||||||||   ||||||     
T  38815346 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccactttgtttggcgtggcttttagggctgtctgtcctac-cataaaagc 38815444  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataa 200  Q
    |||||| | |||||||||||||||||| |||||          ||||||||||||||||||||||| |||||||||| |||||    
T  38815445 cccgacccctaatcccacaagtggtgatacccc----------acacatgcatgttttcctcctacccatccgtacaccataa 38815517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 6592627 - 6592760
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||| ||||| |||||||||||| | ||||| || ||||||||||||||||||||||| |||||| | ||| | ||| || |||||   ||||||||    
T  6592627 aaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttggccactttgcttgacgcagcttttacgactgtctatccta-tcgtaaaagg 6592725  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagt 153  Q
     ||||||| |||||||||||  ||||||| ||||||    
T  6592726 -ccgacacctaatcccacaaacggtgaaaacccagt 6592760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 8882379 - 8882446
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcag 85  Q
    ||||||| ||||||||| |||||||||| ||||| || ||||||||||||||||||||||| ||||||    
T  8882379 aaatggtttaaaagcatattgattgtcagaacacgctttctcatgtttggccactttgcttgacgcag 8882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 8619866 - 8620047
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||| ||||||||||| || || || | ||||||||| ||| ||| ||| |||||  | ||||||||| |||| |||  | ||||||     
T  8619866 aaatggtataaaagcacgttgattgtcaaaatacgctttttcatgtttgaccattttacttgacgcaacttttagggctgtctgttctatcg-taaaagt 8619964  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    | |||    ||||||||||||||||||||||||||||||||  |||||      |||||||| ||| ||| |||||| |||||||||||    
T  8619965 cacgatctctaatcccacaagtggtgaaaccccagtcaagttcacaca------ttttcctcttacccattcgtacaccataacatctg 8620047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 40839713 - 40839776
Alignment:
Q  128 aatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgta 192  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| || |||||    
T  40839713 aatcccacaagtgg-gaaactccaatcaagtctacacatgcatgttttcctcctacccacccgta 40839776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 10189703 - 10189779
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||| |||||| ||||||| |||| ||||||| |||||| ||||||||||||||||  ||||||| | ||||||||    
T  10189703 taatctcacaagcggtgaaatcccaatcaagtccacacatacatgttttcctcctaccaatccgtaaaacataacat 10189779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 11611195 - 11611120
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||||||| |||||||||||||| || ||||| ||||||||||||||||| ||||| ||| | |||| ||||||||    
T  11611195 taatcccacgagtggtgaaacccctgtgaagtccacacatgcatgttttcc-cctacccattcatacaccataacat 11611120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 28196244 - 28196319
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagg 93  Q
    ||||||||||||| |||||| ||| |||||||||||| |||||||||| ||| |||| ||| | |||||| |||||    
T  28196244 aaatggtataaaaacatgtttattatcataacacactttctcatgtttagccgctttacttgatgcagtttttagg 28196319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 42922059 - 42921996
Alignment:
Q  142 tgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    |||||| ||||||||||| |||||||  |||||||||||||| |||| ||||| ||||||||||    
T  42922059 tgaaactccagtcaagtccacacatgtttgttttcctcctacccatctgtacaccataacatct 42921996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 36004174 - 36004230
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccacttt 74  Q
    ||||||||||||| |||||||||||||||||| |||| | |||| ||| ||||||||    
T  36004174 aaatggtataaaaacatgttgattgtcataacgcactttgtcatatttagccacttt 36004230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 4700026 - 4700083
Alignment:
Q  125 cttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccta 182  Q
    ||||| |||||||||||||||||||||||||| || ||| |   ||||||||||||||    
T  4700026 cttaaacccacaagtggtgaaaccccagtcaaatccacatacatatgttttcctccta 4700083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 8115970 - 8116038
Alignment:
Q  126 ttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtaca 194  Q
    ||||||| |||||||||||||||  ||||||||  ||| ||||||||||| ||| ||| ||| ||||||    
T  8115970 ttaatcctacaagtggtgaaaccttagtcaagttcacaaatgcatgtttttctcttacccattcgtaca 8116038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 53619638 - 53619822
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||| |||||| | |||||| |||||||||||| | ||||||     
T  53619638 aaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccactttgcttgacgcagcttttagggttgcctgtcctactg-taaaagc 53619736  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||| ||   ||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  53619737 ccccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaactcatccgtacaccataacat 53619822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 132437 - 132626
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctac-gggtaaaag 116  Q
    |||||||||||||||||||||||||||| |||||  | |||||||||| |||| ||||||| |||||| | |||||||||||||||||||   |||||||    
T  132437 aaatggtataaaagcatgttgattgtcagaacacgatttctcatgttttgccattttgcttgacgcagcttttagggctgcctgtcctacaccgtaaaag 132536  T
Q  117 gcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
     |||||| | |||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||  ||| ||||| |||||||||||    
T  132537 tcccgacccctaatccaacaagtggtgaaaccccagtcaagttcacacatgcatattttcctcctacgtatctgtacaccataacatctg 132626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 50000972 - 50000795
Alignment:
Q  26 taaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacac 125  Q
    |||||||||||||||||||| ||||| || ||||||||||| ||||||||||| |||||| | |||| |||| ||||||||| | |||||| ||| || |    
T  50000972 taaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttgcttgacgcagcttttagagctgtctgtcctaccg-taaaagcccccaccc 50000874  T
Q  126 ttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     | | ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||    
T  50000873 cttaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatc 50000795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 30940793 - 30940610
Alignment:
Q  19 aatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggc 118  Q
    ||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||| ||| |||||  | |||||| || |||||||| || |||||||     
T  30940793 aatggtataaaagcatgttgattgtcagaacacgctttctcatgtttgaccactttacttgacgcaacttttagggttgtctgtcctatgg-taaaaggt 30940695  T
Q  119 ccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
      ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||| ||| |||||| ||||||||    
T  30940694 ttgacacttaatcccacaagtggcgaaacctcagtcaagtctacacaagcatgttttccacctacccattcgtacaccataacat 30940610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 31847139 - 31847326
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||| |||| |||||||| ||||| ||||   | ||||||||||| ||||||||||| |||||| | ||||||||||||||||||| | ||||||     
T  31847139 aaatggtaaaaaaacatgttgactgtcagaacatggtttctcatgtttgaccactttgcttgacgcagcttttagggctgcctgtcctactg-taaaagc 31847237  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||| || | ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |  |||| ||||| ||||| |||||    
T  31847238 ccccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttttcctccaatccatctgtacaccataatatctg 31847326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 55933517 - 55933330
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||| || |||||  | ||||||||| |||||||||  |||||||     
T  55933517 aaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccactttgtttgacgcaacttttagggctgactgtcctac-cgtaaaagc 55933419  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    || ||| ||||| |||||||| ||||||||||| || || |  | |||| ||||||||||||| || |||||||| | |||||||||||    
T  55933418 cctgacccttaaacccacaaggggtgaaaccccggttaaattcagacattcatgttttcctccaacccatccgtagaccataacatctg 55933330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 25504351 - 25504530
Alignment:
Q  22 ggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccg 121  Q
    ||||||||| ||||| |||||| | |||||  | ||||||||||| ||| ||||||| | |||  | |||||| |||||||| ||| | ||||||||| |    
T  25504351 ggtataaaaacatgtcgattgttagaacacgttttctcatgtttgacca-tttgcttgatgcaact-ttagggttgcctgtcataccg-taaaaggcctg 25504447  T
Q  122 acacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    || | |||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||    
T  25504448 acgcctaatcccacaagtggtgaaacctcagtcaagtctatacatgcatgtttttctcctacccatccgtacaccataacatc 25504530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 53170570 - 53170723
Alignment:
Q  29 aagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacactta 128  Q
    ||||||||||| ||||| ||||| || ||||||||||||| ||||| | | || |   | ||||||||||||||| ||| | ||||||| ||||||| ||    
T  53170570 aagcatgttgactgtcagaacacgctttctcatgtttggctactttacctaacacgacttttagggctgcctgtcatactg-taaaaggtccgacaccta 53170668  T
Q  129 atcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  53170669 atcccacgagtggtgaaaccccagtcaagtctacacaagcatgttttccacctac 53170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 26521546 - 26521722
Alignment:
Q  24 tataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgac 123  Q
    ||||||||||||||||||||||||||||  | | |||||||| ||||||||| || |||||  | |||||| ||  ||||||||   ||||||| | |||    
T  26521546 tataaaagcatgttgattgtcataacacgttttttcatgtttagccactttgtttgacgcaacttttagggttgtttgtcctacca-taaaaggtctgac 26521644  T
Q  124 acttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataac 201  Q
     | |||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||| | || ||||| ||||||    
T  26521645 ccctaatcccacaagtgatgaaactccagtcaagtccatacatgcatgttttcctcctacccgtctgtacaccataac 26521722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 56462161 - 56461978
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| ||||| || | ||||||||| |||||||| || |||||  | ||||||  | || | | || | ||||||     
T  56462161 aaatggtataaaaacatgttgattgtcagaacacgctttatcatgtttg-ccactttgtttgacgcaacttttagggtggtctatacaaccg-taaaagt 56462064  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    | |||| | |||||| |||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  56462063 ctcgacccctaatccaacaaatggtgaaacctcagtcaagtccacacatgcatgttttccacctactcatccgtacaccataacat 56461978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 16957594 - 16957775
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||| ||||||||||||| ||| | |||||| |||||||||||| || ||||||  |||||  | ||||| |||||| ||||||  |||| |||    
T  16957594 aaatggtatataagcatgttgattatcagagcacactttctcatgtttggtcattttgctctacgcaacttttaggactgcctatcctac-tgtaagagg 16957692  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||| | |||||| |||||||||      || |||||||| ||||||||||||||| | ||||| |||||||||| |||||||||||    
T  16957693 cccgacccctaatccaacaagtggt------cccgtcaagtccacacatgcatgttttacacctacccatccgtacaccataacatctg 16957775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 3330078 - 3330189
Alignment:
Q  94 gctgcctgtcctacgggtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtac 193  Q
    |||||||||||||| | |||||| ||| || | ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||| |  |||||||||    
T  3330078 gctgcctgtcctaccg-taaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcacgttttcctccaatccatccgtac 3330176  T
Q  194 atcataacatctg 206  Q
    | |||||||||||    
T  3330177 accataacatctg 3330189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 12918427 - 12918242
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| |||||||||  |||||||||||| |||||  | ||| ||||||| |||||||| || |||||  | |||||| ||  |||||||| | ||||||     
T  12918427 aaatagtataaaagtgtgttgattgtcagaacacgatttcttatgtttgaccactttgtttgacgcaacttttagggttgtttgtcctaccg-taaaagc 12918329  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||  |||||||||||||||| |||||| |||||||| |  ||||||||||||||||||| ||| ||||| |||| ||| |||||    
T  12918328 cccgaatcttaatcccacaagtgatgaaactccagtcaactacacacatgcatgttttcctcttacccatccatacaccatgacatc 12918242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 23255756 - 23255822
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgca 84  Q
    |||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||| |||||    
T  23255756 aaatggtataaaagcatgttaattgtcagaacacgctttctcatgtttggccactttgcttgacgca 23255822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 25706652 - 25706745
Alignment:
Q  110 gtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    ||||||| || ||| |||||||| ||| || ||||||||| | ||||||| ||||||||||||||| ||||||| |||| ||||| ||||||||    
T  25706652 gtaaaagccctgacccttaatccgacaggtagtgaaacccaaatcaagtccacacatgcatgtttttctcctacccatctgtacaccataacat 25706745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 12053583 - 12053650
Alignment:
Q  139 tggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||||||||||| | | ||| ||||||||||||||||||||||| |||| ||||| |||||||||||    
T  12053583 tggtgaaaccccaataatgtccacacatgcatgttttcctcctacccatctgtacaacataacatctg 12053650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 54927620 - 54927672
Alignment:
Q  131 cccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctac 183  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||    
T  54927620 cccacaagtggggaaaccccaatcaagtccacacatgcatgtttccctcctac 54927672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 6865726 - 6865683
Alignment:
Q  161 acacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  6865726 acacatgcatgttttcctcctacccatacgtacatcataacatc 6865683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 50463001 - 50462912
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctac 107  Q
    ||||||||| |||||||||||||||||  || ||||| |||||||||||| ||  |||||| |||||  | ||| ||||| |||||||||    
T  50463001 aaatggtatgaaagcatgttgattgtcggaagacactttctcatgtttggtcatcttgcttgacgcaacttttaaggctgtctgtcctac 50462912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 53098579 - 53098644
Alignment:
Q  141 gtgaaaccccag-tcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    |||||||||| | ||||||| |||  |||||||||||||||||| |||||||||| ||||||||||    
T  53098579 gtgaaacccccgatcaagtccacatttgcatgttttcctcctacccatccgtacaccataacatct 53098644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 600747 - 600687
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgctt 78  Q
    |||||||||||||||||||| ||||| | |||||  | |||||||||||| ||||||||||    
T  600747 aaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcactttgctt 600687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 38535532 - 38535456
Alignment:
Q  128 aatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||||||| ||||||||| |||||||||| | ||  ||| |||||||||||| ||||||| ||  ||||||||    
T  38535532 aatcccacaagtagtgaaaccctagtcaagtctgctcacacatattttcctcctacccatccgtccacaataacatc 38535456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 48656965 - 48656917
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttg 66  Q
    ||||||||||||| ||| ||||||| ||||||||||| |||||||||||    
T  48656965 aaatggtataaaaacattttgattgacataacacactttctcatgtttg 48656917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 9815807 - 9815729
Alignment:
Q  127 taatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||||||| ||||| ||||||||  |||||| ||||||||| ||||||||||||||  ||| ||||| |||| ||||||    
T  9815807 taatcccactagtggcgaaaccccgatcaagt-tacacatgcttgttttcctcctacctatctgtacaccatagcatctg 9815729  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 18534585 - 18534636
Alignment:
Q  152 gtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    |||||||| |||||||||||||||||| |||| |||||||| | ||||||||    
T  18534585 gtcaagtccacacatgcatgttttccttctacccatccgtataccataacat 18534636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 24720095 - 24720162
Alignment:
Q  128 aatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacat 195  Q
    ||||||||||| |  |||| |||||||||||| ||| ||||| |||| |||||||| |||||||||||    
T  24720095 aatcccacaagagtggaaatcccagtcaagtccacatatgcacgtttccctcctacccatccgtacat 24720162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 33220766 - 33220579
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||||||||||||||||  |||| || ||||||||||||||||||||||| | |||| | |||| |||| ||||||||| | ||||||     
T  33220766 aaatggtataaaagcatgttgattgtcaacacacgctttctcatgtttggccactttgcttgatgcagcttttagagctgtctgtcctaccg-taaaagc 33220668  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    |||||| | ||| |||||||||||||||||||||||||| |  |||||||||||||||||||| |||||||||||||||||||||||||    
T  33220667 cccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatgcatgttttcctccaactcatccgtacatcataacatctg 33220579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 357766 - 357585
Alignment:
Q  24 tataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgac 123  Q
    |||||||||||||| ||||||| ||||| || ||||||||||||||||||||||| ||| || | |||||||||||||||||||  |||||||  |||||    
T  357766 tataaaagcatgttcattgtcagaacacgctttctcatgtttggccactttgcttgacgaagcttttagggctgcctgtcctac-cgtaaaagcaccgac 357668  T
Q  124 acttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
     | ||| ||||||||||||||||| ||||||||||| ||||||||||||||| |||| || ||||| |||| |||||||||||    
T  357667 ccctaaacccacaagtggtgaaactccagtcaagtccacacatgcatgttttgctccaacccatccatacaccataacatctg 357585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 34304548 - 34304733
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||||  | ||||||| |||||| | ||||||||  |||||| || | ||||||     
T  34304548 aaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggttattttgcttgacgcagcttttagggctagctgtccaaccg-taaaagc 34304646  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||| | ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||  | |||||||||| |||||||||    
T  34304647 cccgactcctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccagcccatccgtacaccataacatc 34304733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 4206651 - 4206466
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||| |||||||||||||| ||||||| ||||| || |||||||||| |||||||||||| ||||   | ||| |||||| |||||||| | |||||||    
T  4206651 aaatgatataaaagcatgttcattgtcagaacacgctttctcatgtttagccactttgcttgacgccacttttaaggctgcatgtcctaccg-taaaagg 4206553  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
     | ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  ||||| |||||||||    
T  4206552 tctgatgcctaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccaacccatttgtacaccataacatc 4206466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 32115773 - 32115926
Alignment:
Q  50 acactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatcccacaagtggtgaaaccc 149  Q
    ||||| |||||||||||||||||||| || |||||  | ||| |||||| |||||||  | ||||| ||||||||| |||||||| ||||| ||||||||    
T  32115773 acactttctcatgtttggccactttgtttgacgcaacttttaaggctgcatgtcctaacg-taaaatgcccgacacctaatcccataagtgatgaaaccc 32115871  T
Q  150 cagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatc 204  Q
    | ||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  32115872 cggtcaagtctacacatgcatgttttcctcctactcatctgtacaccataacatc 32115926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 12401384 - 12401567
Alignment:
Q  19 aatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggc 118  Q
    ||||||||| |||||||||||||  || ||||| || ||| |||||||||||||||| || |||||  | |||| ||||| ||||||||   |||||| |    
T  12401384 aatggtatataagcatgttgattagcaaaacacgctatcttatgtttggccactttgtttgacgcaacttttagtgctgcttgtcctacca-taaaagcc 12401482  T
Q  119 ccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    | ||  | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  12401483 ctgaaccataatcccataagtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacaccataacat 12401567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 959632 - 959807
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||  |||||||||||||| |||||  | ||||||| || |||||||||||| || ||  | |||||| ||  |||||||| | |||||||    
T  959632 aaatggtataaagacatgttgattgtcagaacacgttttctcatggttagccactttgcttgacacaacttttagggttgtttgtcctaccg-taaaagg 959730  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtaca 194  Q
    |||||||| |||||||| ||||||||||||  || ||||||| ||||||||||||||||||||||| ||||||||||    
T  959731 cccgacacctaatcccataagtggtgaaacttcaatcaagtccacacatgcatgttttcctcctacccatccgtaca 959807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 45732 - 45537
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||| ||||||||||||||||||||| |||||  | |||||||||||  |||||||||| | |||| | |||| |||||||||||||| |||||||||    
T  45732 aaatggaataaaagcatgttgattgtcagaacacgttttctcatgtttgatcactttgcttgatgcagcttttagagctgcctgtcctac-ggtaaaagg 45634  T
Q  118 cccgacacttaatcccacaagtggtgaaaccc--------cagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
     ||||||| ||||||||||||||||||||| |        | |||||||||||||| |||||||||||  |||| |||||||||| ||| |||||||    
T  45633 tccgacacctaatcccacaagtggtgaaacacctgtcaagctgtcaagtctacacaagcatgttttccatctacccatccgtacaccatcacatctg 45537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 17249360 - 17249199
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||  | |||||| ||  ||||||||  |||||||     
T  17249360 aaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccactttgtttgacgcaacttttagggttgtttgtcctac-cgtaaaagc 17249262  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcc 180  Q
     || || |  || ||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  17249261 gcccactccgaaacccacaaatggtgaaaccccagtcaagtccacacatgcatattttcctcc 17249199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 28543427 - 28543614
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||| |||||| |||||  ||||| ||| |||||  | ||||||||||||||||||||||| ||||   | ||| ||||||||||| ||| | ||||||     
T  28543427 aaatagtataagagcatagtgattttcaaaacacgatttctcatgtttggccactttgcttgacgcgacttttaaggctgcctgtcttaccg-taaaagt 28543525  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    || |||   |||||||||||||||||||||| ||||||| || ||||||||||||||||||||||  |||| |||||||||||||||||    
T  28543526 cctgacctctaatcccacaagtggtgaaacctcagtcaaatccacacatgcatgttttcctcctatccatctgtacatcataacatctg 28543614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 34415488 - 34415663
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||||| |||| ||||||| |||||| |  || || ||||| ||||||  |||||||     
T  34415488 aaatggcataaaagcatgttgattgtcagaacacactttctcatgtttcgccattttgcttgacgcagcttgtaaggatgcctatcctac-cgtaaaagt 34415586  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtaca 194  Q
    || ||| | |||||| ||  |||||||||||||| ||||||  ||| ||| ||||||||||||||| ||||| ||||    
T  34415587 cctgacccctaatccaacgtgtggtgaaaccccaatcaagttcacaaatgtatgttttcctcctacccatccataca 34415663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 34168920 - 34169011
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgg 109  Q
    ||||||||||||||||||||| |||||  ||||  || ||||||||||||||||||||||| |||||  | |||||| ||| ||||||||||    
T  34168920 aaatggtataaaagcatgttgcttgtccaaacatgctttctcatgtttggccactttgcttgacgcaaattttagggttgcatgtcctacgg 34169011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 28009004 - 28008867
Alignment:
Q  56 tctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaaggcccgacacttaatcccacaagtggtgaaaccccagtca 155  Q
    ||||||||||| || |||||||| ||| || | |||||| ||| |||||||| | |||||| |||||| | ||||||||| ||||||||||| |||||||    
T  28009004 tctcatgtttgaccgctttgcttgacgtagcttttagggttgcatgtcctaccg-taaaagccccgacccctaatcccacgagtggtgaaactccagtca 28008906  T
Q  156 agtctacacatgcatgttttcctcctactcatccgtaca 194  Q
    |||  ||   |||||||||| ||| |||||||| |||||    
T  28008905 agttcacctgtgcatgtttttctcttactcatctgtaca 28008867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4165977 - 4165919
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgc 76  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||||| ||||||||||    
T  4165977 aaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttagccactttgc 4165919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 34554332 - 34554169
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| ||| |||||| ||| ||||| || |||||||||||| |  ||||||| |||||  | |||| | || ||| |||||   ||||||     
T  34554332 aaatggtataaaaacatcttgattatcagaacacgctttctcatgtttggtcgttttgcttgacgcaacttttagtgttgtctgacctactt-taaaagc 34554234  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccta 182  Q
    || ||  | ||||||||||| ||||||||||||| |||| || ||| |||| |||||||||||||    
T  34554233 cctgatccctaatcccacaattggtgaaaccccaatcaaatccacatatgcttgttttcctccta 34554169  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 24016481 - 24016551
Alignment:
Q  112 aaaaggcccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctccta 182  Q
    ||||| |||||| | ||||||||||||||| ||||| || ||||| |  ||||||||||||||||||||||    
T  24016481 aaaagccccgactcctaatcccacaagtggggaaactccggtcaaattcacacatgcatgttttcctccta 24016551  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 29338004 - 29337951
Alignment:
Q  153 tcaagtctacacatgcatgttttcctcctactcatccgtacatcataacatctg 206  Q
    ||||||| ||||||||||||||||||||||| |||| | ||| |||||||||||    
T  29338004 tcaagtccacacatgcatgttttcctcctacccatctgcacaccataacatctg 29337951  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 29338134 - 29338074
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgctt 78  Q
    ||||||||||| |||||||||||||| | |||||  | |||||||||||||  ||||||||    
T  29338134 aaatggtataagagcatgttgattgttagaacacgttttctcatgtttggcagctttgctt 29338074  T

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Target: scaffold0490 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 6386 - 6542
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| ||| |||||  | ||||||||| ||||||||| |||||||||    
T  6386 aaatggtatagaagcatgttgattgtcagaacacgctttctcatgtttggccactttacttgacgcaacttttagggctgtctgtcctac-ggtaaaagg 6484  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttc 176  Q
     ||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6485 tccgac-cctaatcccacaagtggtgaaaccccagtcaagtctacacaagcatgttttc 6542  T

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Target: scaffold0148 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 33302 - 33488
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||| |||||||||||||| ||||| || |||||||||| |||||||||||| | ||   | ||| || |||||||||||| | |||||||    
T  33302 aaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttagccactttgcttgatgccact-ttaaggttgcctgtcctaccg-taaaagg 33399  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgc--atgttttcctcctactcatccgtacatcataacatc 204  Q
    |||||||| |||||||| |||||||||||||||| |||||| | |||||||  ||||||||||||||| |||||||||| |||||||||    
T  33400 cccgacacctaatcccataagtggtgaaaccccaatcaagtttgcacatgcatatgttttcctcctacccatccgtacaccataacatc 33488  T

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Target: scaffold0009 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 103158 - 103274
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    ||||||||||||||||||||||||||||  |||| || |||| ||||||||||  || ||| |||||| | | ||||||||||||||||| |||||||||    
T  103158 aaatggtataaaagcatgttgattgtca-gacacgctttctcgtgtttggccatcttacttgacgcagctttgagggctgcctgtcctac-ggtaaaagg 103255  T
Q  118 cccgacacttaatcccaca 136  Q
    |||||||| | ||||||||    
T  103256 cccgacaccttatcccaca 103274  T

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Target: scaffold0110 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 47594 - 47410
Alignment:
Q  18 aaatggtataaaagcatgttgattgtcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaaaagg 117  Q
    |||||||||||||  ||||| | ||||| |||||| | ||||||||||||||| ||| ||| |||||  | |||||  |   |||||||| | ||||||     
T  47594 aaatggtataaaaatatgttaactgtcagaacacattttctcatgtttggccattttacttgacgcaacttttaggtttatttgtcctaccg-taaaagt 47496  T
Q  118 cccgacacttaatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctactcatccgtacatcataacat 203  Q
    | | |  | ||||||||||||||||||||||||| ||||||| |||| ||||| |||| ||| |||||||  ||||| ||||||||    
T  47495 ctcaatccctaatcccacaagtggtgaaaccccaatcaagtccacacttgcatttttttctcatactcatttgtacaccataacat 47410  T

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Target: scaffold0186 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 10412 - 10546
Alignment:
Q  18 aaatggtataaaagcatgttgattg----tcataacacactgtctcatgtttggccactttgcttcacgcagttcttagggctgcctgtcctacgggtaa 113  Q
    |||||||||||||||||||||||||    ||| ||||| |  | ||||||||||||| ||| ||| |||||  | |||||||||| ||||| ||  ||||    
T  10412 aaatggtataaaagcatgttgattgattgtcagaacacgcattatcatgtttggccattttacttgacgcaacttttagggctgcttgtccaac-tgtaa 10510  T
Q  114 aaggcccgacacttaatcccacaagtggtgaaaccc 149  Q
    ||| ||| || | ||||||||| |||||||||||||    
T  10511 aagccccaacccctaatcccacgagtggtgaaaccc 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 19916 - 19959
Alignment:
Q  162 cacatgcatgttttcctcctactcatccgtacatcataacatct 205  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||    
T  19916 cacatgcatgttttcctcctacctatccgtacaccataacatct 19959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 8462 - 8406
Alignment:
Q  128 aatcccacaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctact 184  Q
    ||||| |||||||| |||||||||||| |||| | |||||||||||| |||||||||    
T  8462 aatcctacaagtggggaaaccccagtccagtccaaacatgcatgtttccctcctact 8406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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