View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_64 (Length: 214)

Name: NF3018_low_64
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_64
NF3018_low_64
[»] chr5 (3 HSPs)
chr5 (16-199)||(14337536-14337719)
chr5 (62-108)||(38685296-38685342)
chr5 (67-115)||(10948766-10948814)
[»] chr7 (3 HSPs)
chr7 (51-109)||(25280406-25280464)
chr7 (51-91)||(8093856-8093896)
chr7 (65-113)||(46179911-46179958)
[»] chr8 (1 HSPs)
chr8 (59-109)||(14619001-14619051)
[»] chr2 (1 HSPs)
chr2 (60-94)||(32102856-32102890)
[»] chr6 (2 HSPs)
chr6 (61-94)||(24105287-24105320)
chr6 (61-105)||(201518-201562)
[»] chr1 (2 HSPs)
chr1 (55-95)||(32587198-32587239)
chr1 (59-95)||(32638457-32638493)


Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 14337536 - 14337719
Alignment:
Q  16 cacagattgaagctttgtttgttgttcgacagttatcagacatcgacatgacactgacacatgtgattatattcaattatttccattttctcaacttact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14337536 cacagattgaagctttgtttgttgttcgacagttatcagacatcgacatgacactgacacacgtgattatattcaattatttccattttctcaacttact 14337635  T
Q  116 tagtgtcgatgtcgtgtctatgtatgaatttcatagctcaatactaatgaaaatgacaacacaaaagtatagaaaaatcaaact 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14337636 tagtgtcgatgtcgtgtctatgtatgaatttcatagctcaatactaatgaaaatgacaacacaaaagtatagaaaaatcaaact 14337719  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 38685296 - 38685342
Alignment:
Q  62 catgacactgacacatgtgattatattcaattatttccattttctca 108  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||    
T  38685296 catgacactgacacatgtggttacattcaattacttccattttctca 38685342  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 10948766 - 10948814
Alignment:
Q  67 cactgacacatgtgattatattcaattatttccattttctcaacttact 115  Q
    |||| ||||||||| ||||||||||||| ||||||||| |||| |||||    
T  10948766 cactaacacatgtggttatattcaattacttccattttttcaaattact 10948814  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 25280464 - 25280406
Alignment:
Q  51 tcagacatcgacatgacactgacacatgtgattatattcaattatttccattttctcaa 109  Q
    |||||||  |||| |||||  ||||||||||||||||||||||| ||||||||||||||    
T  25280464 tcagacactgacacgacacaaacacatgtgattatattcaattacttccattttctcaa 25280406  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 8093896 - 8093856
Alignment:
Q  51 tcagacatcgacatgacactgacacatgtgattatattcaa 91  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  8093896 tcagacaccgacttgacactgacacatgtgattatattcaa 8093856  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 46179911 - 46179958
Alignment:
Q  65 gacactgacacatgtgattatattcaattatttccattttctcaactta 113  Q
    ||||| |||||||||||||||||||||||| ||  ||||||||||||||    
T  46179911 gacaccgacacatgtgattatattcaattaatt-tattttctcaactta 46179958  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 14619001 - 14619051
Alignment:
Q  59 cgacatgacactgacacatgtgattatattcaattatttccattttctcaa 109  Q
    ||||||||||| ||||| |||||||  ||||||||| ||||||||||||||    
T  14619001 cgacatgacaccgacacttgtgatttcattcaattacttccattttctcaa 14619051  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 32102856 - 32102890
Alignment:
Q  60 gacatgacactgacacatgtgattatattcaatta 94  Q
    ||||||||||||||| |||||||||||||||||||    
T  32102856 gacatgacactgacaaatgtgattatattcaatta 32102890  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 24105287 - 24105320
Alignment:
Q  61 acatgacactgacacatgtgattatattcaatta 94  Q
    ||||||||||||||||| ||||||||||||||||    
T  24105287 acatgacactgacacatttgattatattcaatta 24105320  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 201562 - 201518
Alignment:
Q  61 acatgacactgacacatgtgattatattcaattatttccattttc 105  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||    
T  201562 acatgacactgacacatgtgattacattaaattatatcctttttc 201518  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32587239 - 32587198
Alignment:
Q  55 acatcgaca-tgacactgacacatgtgattatattcaattat 95  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  32587239 acatcgacactgacactgacacatgtgattacattcaattat 32587198  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 32638493 - 32638457
Alignment:
Q  59 cgacatgacactgacacatgtgattatattcaattat 95  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  32638493 cgacacgacactgacacatgtgattacattcaattat 32638457  T

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