View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3018_low_65 (Length: 210)
Name: NF3018_low_65
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3018_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 4239303 - 4239131
Alignment:
| Q |
22 |
cccttatgcatgtggttaaaagttagattttttattcttgtgggtggaaaaaa-tccagtttgaaggggtaaacc-aacttgtctgcctcacaggttttc |
119 |
Q |
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| T |
4239303 |
cccttaagcatgtagttaaaagttagatttctgattcttgtgggtggaaaaaaatccggtttgaaggggtaaacccaacttgtttgcctcacagattttc |
4239204 |
T |
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| Q |
120 |
ccggagatcaatcactgttaaacggtggtggaaacttcgtataaatatcattgtaaccaacaaaaatatgaat |
192 |
Q |
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| T |
4239203 |
ccggagatcaatcaccgttaaacggtagtggaaacttcatataaatatcattgtaaccagcaaaaatatgaat |
4239131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 4247742 - 4247649
Alignment:
| Q |
96 |
aacttgtctgcctcacaggttttcccggagatcaatcactgttaaacggtggtggaaacttcgtataaatatcattgtaaccaacaaaaatatgaa |
191 |
Q |
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| T |
4247742 |
aacttgtctgccccacatgtttttctggagattagtcaccgttaaacgg--gtagaaacttcgtataaatatcatggtaacaaaaaaaaatatgaa |
4247649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 38614641 - 38614468
Alignment:
| Q |
20 |
accccttatgcatgtggttaaaagttagattttttattcttgtgggtggaaaaaatccagtttgaaggggtaaac-caacttgtctgcctcacaggtttt |
118 |
Q |
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| T |
38614641 |
accccttaagcatgcggtcaaaggttcaatttcttattcttgtatgtgggaaaaatccggtttgaaggggagaactcaacttatctgccccataggtttt |
38614542 |
T |
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| Q |
119 |
cc-cggagatcaatcactgttaaacggtggtggaaacttcgtataaatatcattgtaaccaacaaaaatatgaat |
192 |
Q |
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| T |
38614541 |
tttcgaagattagttaccgttaaacgaaggtggaaacttcatataaatatcatggtaa-caaaaaaaatatgaat |
38614468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 38615447 - 38615414
Alignment:
| Q |
143 |
ggtggtggaaacttcgtataaatatcattgtaac |
176 |
Q |
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| T |
38615447 |
ggtggtggaaacttcgtataaatatcatagtaac |
38615414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 4164542 - 4164697
Alignment:
| Q |
29 |
gcatgtggttaaaagttagattttttattcttgtgggtggaaaaaatccagtttgaaggggtaaacc-aacttgtctgcctcacaggttttcccggagat |
127 |
Q |
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| T |
4164542 |
gcatgtggtttaaggttcgattttttattcttatgtgtggaaaaagttcggtttgaaggggagaaccaaacttgtctgcc-cacatattttcctaaagag |
4164640 |
T |
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| Q |
128 |
caatcactgttaaacggtggtggaaacttcgtataaatatcattgtaaccaacaaaaa |
185 |
Q |
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| T |
4164641 |
tagttaccgttaaacgatggtggaaacttcgtat-aatatcatggtaacaaaaaaaaa |
4164697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 49942659 - 49942711
Alignment:
| Q |
123 |
gagatcaatcactgttaaacggtggtggaaacttcgtataaatatcattgtaa |
175 |
Q |
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| T |
49942659 |
gagattaatcattgttaaccggtggtggaaacttcatatcaatatcatggtaa |
49942711 |
T |
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