View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3018_low_68 (Length: 206)

Name: NF3018_low_68
Description: NF3018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3018_low_68
NF3018_low_68
[»] chr7 (4 HSPs)
chr7 (15-169)||(41851192-41851347)
chr7 (94-162)||(30061171-30061240)
chr7 (35-156)||(684971-685092)
chr7 (93-128)||(22815837-22815872)
[»] chr8 (3 HSPs)
chr8 (59-136)||(20896181-20896259)
chr8 (46-159)||(6261048-6261160)
chr8 (90-164)||(44148236-44148306)
[»] chr4 (5 HSPs)
chr4 (47-164)||(44015394-44015512)
chr4 (38-112)||(19473024-19473098)
chr4 (90-138)||(1208719-1208763)
chr4 (90-136)||(30643617-30643664)
chr4 (90-168)||(53176826-53176905)
[»] chr6 (2 HSPs)
chr6 (18-174)||(8585683-8585840)
chr6 (52-158)||(26847137-26847244)
[»] chr2 (2 HSPs)
chr2 (90-190)||(40204752-40204853)
chr2 (71-112)||(38529886-38529927)
[»] chr5 (1 HSPs)
chr5 (18-136)||(33922815-33922934)
[»] chr3 (1 HSPs)
chr3 (90-153)||(39488506-39488570)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 41851192 - 41851347
Alignment:
Q  15 caagtttcacttggatcacgtaggttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-tta 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41851192 caagtttcacttggatcacgtaggttttgataacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattattta 41851291  T
Q  114 cattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaactaa 169  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41851292 cattagagagaatgattgattaaaatagagataaaaacaatgtcaccaaaaactaa 41851347  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 30061171 - 30061240
Alignment:
Q  94 atgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaataatgtcaccaa 162  Q
    ||||||||||||||||||| | || ||||| ||| ||||||||| | ||||||||||| |||||||||||    
T  30061171 atgattaaaataaattatttagatgagagaaaattattgattaacagagagataaaaacaatgtcaccaa 30061240  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 684971 - 685092
Alignment:
Q  35 taggttttg-atgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattatt-acattagagagaatgattga 132  Q
    ||||||||| ||||||||||| |  ||| ||||||| |||| ||| | |||| |  ||||| ||||||||||||||||| | || ||| | |||||||||    
T  684971 taggttttgcatgacattggtta--ttaatgcattttagatgagaaagaatattagatgaaagattaaaataaattatttagatgagataaaatgattga 685068  T
Q  133 ttaaaatagagataaaaataatgt 156  Q
    |||||| |||||| ||||||||||    
T  685069 ttaaaagagagatgaaaataatgt 685092  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 22815837 - 22815872
Alignment:
Q  93 aatgattaaaataaattattacattagagagaatga 128  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22815837 aatgattaaaataaattattagattagagagaatga 22815872  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 20896181 - 20896259
Alignment:
Q  59 ttagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaa 136  Q
    ||||||||||| |||| ||||| |||  | |||||||||||||||||||||| ||| || |||||||||||||||||||    
T  20896181 ttagtgcattttagatgagagataatgatatatgaatgattaaaataaattatttagatgagagagaatgattgattaa 20896259  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 6261160 - 6261048
Alignment:
Q  46 gacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagaga 144  Q
    ||||||||||| |||||| ||||| |||| ||| | ||||||| |||||| ||| |||||||||| ||| || ||||||||| ||||||||||| |||||    
T  6261160 gacattggtgacattagtacattttagatgagaaagaatagttgatgaataattcaaataaattatttagatgagagagaat-attgattaaaa-agaga 6261063  T
Q  145 taaaaataatgtcac 159  Q
    || | | ||||||||    
T  6261062 tagatacaatgtcac 6261048  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 44148236 - 44148306
Alignment:
Q  90 atgaatgattaaaataaattattacattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaa 164  Q
    ||||| |||||||||||||||||   ||| ||||||| ||| ||||| |||||||||| || |||||||||||||    
T  44148236 atgaacgattaaaataaattatt---tta-agagaataatttattaagatagagataagaacaatgtcaccaaaa 44148306  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 44015394 - 44015512
Alignment:
Q  47 acattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagagat 145  Q
    |||||||||| ||||||| |||| |||| ||| | |||  |  ||||||||||||||||||||| ||| || ||||| || |||||||||| | ||||||    
T  44015394 acattggtgacattagtgtattttagatgagaaagaatgatagatgaatgattaaaataaattatttagatgagagataaagattgattaagagagagat 44015493  T
Q  146 aaaaataatgtcaccaaaa 164  Q
    || || |||||||||||||    
T  44015494 aagaacaatgtcaccaaaa 44015512  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 19473024 - 19473098
Alignment:
Q  38 gttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattatt 112  Q
    ||||||||||||||||||| |||| || |||| |||  |||||||||  |  |||||||||||||||||||||||    
T  19473024 gttttgatgacattggtgatattaatgtattttagaggagagaaaatgatacatgaatgattaaaataaattatt 19473098  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 1208719 - 1208763
Alignment:
Q  90 atgaatgattaaaataaattattacattagagagaatgattgattaaaa 138  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||    
T  1208719 atgaatgattaaaataaattat----ttagagagaatgattgattaaaa 1208763  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 30643617 - 30643664
Alignment:
Q  90 atgaatgattaaaataaatta-ttacattagagagaatgattgattaa 136  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||||    
T  30643617 atgaatgattaaaataaattatttagatgagagagaatgattgattaa 30643664  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 53176905 - 53176826
Alignment:
Q  90 atgaatgattaaaataaatta-ttacattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaacta 168  Q
    ||||||||||||||||||||| ||| || ||||| ||||||||||||||| | |  || ||||||||||| |||| ||||    
T  53176905 atgaatgattaaaataaattatttagatgagagaaaatgattgattaaaagaaaagtagaaataatgtcatcaaatacta 53176826  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 8585840 - 8585683
Alignment:
Q  18 gtttcacttggatcacgtaggttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaatta-ttacat 116  Q
    ||||||||||| | || ||| ||||||||||||| |||| ||||||| |||| |||| | ||| |||  |  ||||||||||||||||||| | ||| ||    
T  8585840 gtttcacttgggtgacatagtttttgatgacattagtgacattagtgtattttagatgaaagagaatgatggatgaatgattaaaataaatgatttagat 8585741  T
Q  117 tagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaactaatgtca 174  Q
     | ||||| |||| |||||| | |||||||  || ||||||||  ||||| |||||||    
T  8585740 gaaagagagtgatcgattaagagagagataggaacaatgtcacataaaaccaatgtca 8585683  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 26847244 - 26847137
Alignment:
Q  52 ggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaa 150  Q
    ||||| ||||||| |||| |||| ||||| |||  |  |||||||| |||||||||||||| | || ||||| ||| ||||||||||| ||||||| |||    
T  26847244 ggtgacattagtgtattttagatgagagagaatgatagatgaatgagtaaaataaattatttagataagagataataattgattaaaagagagatataaa 26847145  T
Q  151 taatgtca 158  Q
     |||||||    
T  26847144 caatgtca 26847137  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 40204752 - 40204853
Alignment:
Q  90 atgaatgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaataatgtcaccaaaaactaatgtcatttaaatgcaatct 188  Q
    |||||| |||||||||||||||| |  | | ||||||| ||||||||| |  |||||| ||| ||||||| ||||| ||||||||| | |||||||||||    
T  40204752 atgaattattaaaataaattatttaggtgaaagagaataattgattaagagggagatataaacaatgtcatcaaaatctaatgtcactcaaatgcaatct 40204851  T
Q  189 gt 190  Q
    ||    
T  40204852 gt 40204853  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 38529886 - 38529927
Alignment:
Q  71 agataagagaaaatagtttatgaatgattaaaataaattatt 112  Q
    |||| ||||| |||| ||||||||||||||||||||||||||    
T  38529886 agatgagagataataatttatgaatgattaaaataaattatt 38529927  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 33922815 - 33922934
Alignment:
Q  18 gtttcacttggatcacgtaggttttgatgacattggtgagattagtgcatttgagataagagaaaatagtttatgaatgattaaaataaattat-tacat 116  Q
    ||||||||||  | || ||| |||||||||||||| ||| ||||||| |||  |||| ||||| |||  |  ||||||||||||||||||| || || ||    
T  33922815 gtttcacttgagtgacatagtttttgatgacattgatgatattagtgtattctagatgagagagaatgataaatgaatgattaaaataaataatgtagat 33922914  T
Q  117 tagagagaatgattgattaa 136  Q
     ||||||| |||||||||||    
T  33922915 gagagagagtgattgattaa 33922934  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 39488506 - 39488570
Alignment:
Q  90 atgaatgattaaaataaattatt-acattagagagaatgattgattaaaatagagataaaaataa 153  Q
    |||||| |||||||||||||||| | |  ||||| ||||||||||||| ||||||||| ||||||    
T  39488506 atgaataattaaaataaattatttaaaaaagagaaaatgattgattaagatagagatagaaataa 39488570  T

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